BS29191.complete Sequence
2903 bp assembled on 2012-06-19
GenBank Submission: KX802737
> BS29191.complete
GAAGTTATCAGTCGACATGATGCACAAATTGAAATATCGCGATAAATTAA
AATGGCTTTTAGCCCTTCTTGTGCTGATCGGCACTTGTTTTATTCAGACA
AGGGGACAAACAAGAGATCCCAGATTTTATTCTCGGCCAGGCGTTGACTA
CCATTGGCCAAATCCAGGCGATCCGGATTACAGAACCTACACGTTCAACG
ATCGCCGATATGGTCATTATCAGCCAAATGGCTATGGAGCCAACTATCCA
GGCAGAAATCCACCGGGACAATATCCACAGGGAATGCCGAATGAAGATCG
CTTTCGATTTGACCCGAACGATCCGAATGCGAGAACCCAGTTTCCGGGAG
TGCTGGCCGGATGGCGAGAGGATTTGCAGGGCAAGCAGCGGCGGGATTCG
TTGACCCTGGAGCGGGATGTTTTCGTGACCACCAACTATGGCCAGGTGCA
GGGCTTTAAGGTGTACATGTACGATAATCCAGATCCGAAGTCCTTCTATC
GTCCCTACCACTCGACCGTGGATCGTGTGATGGGCGAGTGCTCGGTCTTC
CTGGGCATTCCCTACGCCCTGCCGCCCACCTTCGAGGGCAGGTTCAAGCC
ACCACGCGTCCATCGAGGCTGGCAGCTGCTGCAGGCCGTCGACTTTGGAC
CCGCCTGTCCACAGCCTGTGCGATATACGGGTGCCACGAAAGGAATCATG
GACATGGACGAGGATTGCCTCTACTTGAACGTGTATTCGCCGAAGACTGG
TGCTGGTGTGGCTCAAAAATACCCGGTTATGGTGTACATCCATGGCGGCG
AGTTCATTCGTGGAGCCTCCAACCTATTCCAGGGTCATATTCTGGCCTCG
TTCTACGACGTGGTCGTGGTGACCCTGAATTACCGCCTTGGTGCCCTGGG
ATTCCTATCGACGGGTGATGAGAACTCGCCCGGAAACTACGGAATCCTCG
ATCAAGCGATGGCGCTACGTTGGGTCTATGACAATATTGAGTTCTTCAAC
GGCGATCGGAATTCCATCACTCTATTTGGTCCGGGAGCAGGAGGCGCCTC
CGCTGGACTCCTGATGGTGGCACCACAGACGCGGAACATTGTGCGTCGTG
TGATCGCACAGTCCGGATCGGCTCTAGCGGATTGGGCGCTCATCCAGGAC
AAGTATCGCGCCCAGAACACGAGTCGCGTGCTGGGACAGCTGCTGGGCTG
CTCCATTGAATCGTCGTGGAAGTTGGTCAACTGCCTGCGCACCGGACGCA
GCTTCTATGAGCTGGGAAACGCTGAGTTCTCTCCCCAGGTGGGCAGCTTT
CCATGGGGTCCAGTTCTGGACCACAACTTTACGTTGCCCGGCGACGATTG
GTACGAGGGATGGCGCGAAAAGGATTGGCGTTTCCTCACCCAAACGCCGG
AAACCCTCATCCGTGCCGGTAAATTCAACCGGAATATTCAGTACATGACG
GGCGTGACCACACAGGAAGCGGCCTTTTTTGTGGCCCAAAACGAATCCCT
AAGTCCGTACTATGAACTAGATGGACGTTTCTTCGATCAGAAAATAAGGG
AACACGTTTTCCGCTACAACTATACACTTAATCCGAACGGAGTTTACGAG
GCCATCAAGTACATATACACCTTCTGGCCGGATCCCAATAATAACACCAT
AATCCGGGACCAGTACATAAACATGCTGAGTGATCTCTACTACCGAGCAC
CGGTGGATCAAATGGTCAAGCTAATGCTGGAGCAGAAGGTACCCGTTTAT
ATGTACGTACTGAACACCACTGTGGAGGCACTGAATCTGCCACAGTGGCG
AAAGTATCCACACGACATCGAACGTTATTTCCTCACCGGAGCTCCCTTCA
TGGACACCGAGTTCTTTCCCAAAAAGGAGCATCTGCAGCGCAATATGTGG
ACGGATAACGATCGCAATATGAGTCACTTTTTCATGCAGACCTACACGAA
TTTTGCTAGATATGGCAATCCGACGCCGCAACAGGTGCTAGGCATGCATT
TCCAGCGCGCATACCAGGGCGAGATTCGGTACTTGAACATCAATACCACG
TACAACTCCTCCATTCTACTCAACTATCGGCAGACGGAGTGCGCCTTCTG
GACGCAATACTTGCCCACAGTTATTGGAGTGCTGGTGCCCACTTATCCAC
CCACCACGGAGTATTGGTGGGAGCCCAAGGAGCCACTACAGATCGCCTTT
TGGAGCATGTCGGTGGCCTGTTTCTTCCTCATAGTCCTGGTGGTCATCTG
CTGCATCATGTGGCGCAATGCCAAGCGCCAATCGGATCGCTTCTATGACG
AAGATGTCTTCATTAATGGTGAGGGCTTGGAACCGGAACAGGATACGCGT
GGAGTGGACAATGCCCACATGGTGACCAACCATCATGCCCTGCGCTCCAG
GGATAATATCTACGAGTACCGCGACTCTCCATCCACCAAAACCTTGGCCA
GCAAAGCGCACACGGACACCACCTCGTTGCGCTCACCCAGTTCGCTGGCC
ATGACCCAAAAGTCCAGCAGCCAGGCGTCCCTCAAGTCAGGGATCTCGCT
CAAGGAAACCAATGGCCATTTGGTGAAGCAATCTGAAAGGGCAGCCACGC
CACGATCCCAACAAAATGGGTCCACCGCAAAGGTGGCGTCTCCTCCTGTG
GAGGAGAAGCGTCTACTGCAGCCACTTTCCAGCACGCCCGTGACGCAGTT
GCAGGCGGAGCCGGCCAAAAGAGTTCCCACCGCTGCCAGTGTCTCGGGCA
GCAGTCGGAGCACCACTCCGGTGCCCTCTGCCCGCAGCACCACCACGCAC
ACCACAACAGCCACCCTGAGTTCCCAGCCAGCGGCTCAGCCGAGGAGAAC
CCACCTGGTGGAGGGAGTGCCTCAGACATCCGTATAAAAGCTTTCTAGAC
CAT
BS29191.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gli-RF | 2871 | CG3903-PF | 1..2871 | 17..2887 | 14355 | 100 | Plus |
| Gli-RE | 2871 | CG3903-PE | 1..2871 | 17..2887 | 14355 | 100 | Plus |
| Gli-RD | 2871 | CG3903-PD | 1..2871 | 17..2887 | 14355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gli-RF | 4468 | CG3903-RF | 569..3440 | 16..2887 | 14360 | 100 | Plus |
| Gli-RE | 4007 | CG3903-RE | 108..2979 | 16..2887 | 14360 | 100 | Plus |
| Gli-RD | 3975 | CG3903-RD | 76..2947 | 16..2887 | 14360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15758141..15759362 | 1965..744 | 6110 | 100 | Minus |
| 2L | 23513712 | 2L | 15757096..15757706 | 2887..2277 | 3055 | 100 | Minus |
| 2L | 23513712 | 2L | 15759417..15759846 | 745..316 | 2150 | 100 | Minus |
| 2L | 23513712 | 2L | 15757767..15758079 | 2277..1965 | 1565 | 100 | Minus |
| 2L | 23513712 | 2L | 15760402..15760569 | 183..16 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 15760210..15760348 | 316..178 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:38:58 has no hits.
BS29191.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-19 17:17:56 Download gff for
BS29191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gli-RD | 74..2942 | 17..2885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:06 Download gff for
BS29191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gli-RD | 77..2945 | 17..2885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:48:27 Download gff for
BS29191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gli-RD | 77..2945 | 17..2885 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:48:27 Download gff for
BS29191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15757098..15757705 | 2278..2885 | 100 | <- | Minus |
| 2L | 15757767..15758078 | 1966..2277 | 100 | <- | Minus |
| 2L | 15758141..15759360 | 746..1965 | 100 | <- | Minus |
| 2L | 15759417..15759845 | 317..745 | 100 | <- | Minus |
| 2L | 15760210..15760342 | 184..316 | 100 | <- | Minus |
| 2L | 15760402..15760568 | 17..183 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:06 Download gff for
BS29191.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15760210..15760342 | 184..316 | 100 | <- | Minus |
| arm_2L | 15760402..15760568 | 17..183 | 100 | | Minus |
| arm_2L | 15757098..15757705 | 2278..2885 | 100 | <- | Minus |
| arm_2L | 15757767..15758078 | 1966..2277 | 100 | <- | Minus |
| arm_2L | 15758141..15759360 | 746..1965 | 100 | <- | Minus |
| arm_2L | 15759417..15759845 | 317..745 | 100 | <- | Minus |
BS29191.pep Sequence
Translation from 16 to 2886
> BS29191.pep
MMHKLKYRDKLKWLLALLVLIGTCFIQTRGQTRDPRFYSRPGVDYHWPNP
GDPDYRTYTFNDRRYGHYQPNGYGANYPGRNPPGQYPQGMPNEDRFRFDP
NDPNARTQFPGVLAGWREDLQGKQRRDSLTLERDVFVTTNYGQVQGFKVY
MYDNPDPKSFYRPYHSTVDRVMGECSVFLGIPYALPPTFEGRFKPPRVHR
GWQLLQAVDFGPACPQPVRYTGATKGIMDMDEDCLYLNVYSPKTGAGVAQ
KYPVMVYIHGGEFIRGASNLFQGHILASFYDVVVVTLNYRLGALGFLSTG
DENSPGNYGILDQAMALRWVYDNIEFFNGDRNSITLFGPGAGGASAGLLM
VAPQTRNIVRRVIAQSGSALADWALIQDKYRAQNTSRVLGQLLGCSIESS
WKLVNCLRTGRSFYELGNAEFSPQVGSFPWGPVLDHNFTLPGDDWYEGWR
EKDWRFLTQTPETLIRAGKFNRNIQYMTGVTTQEAAFFVAQNESLSPYYE
LDGRFFDQKIREHVFRYNYTLNPNGVYEAIKYIYTFWPDPNNNTIIRDQY
INMLSDLYYRAPVDQMVKLMLEQKVPVYMYVLNTTVEALNLPQWRKYPHD
IERYFLTGAPFMDTEFFPKKEHLQRNMWTDNDRNMSHFFMQTYTNFARYG
NPTPQQVLGMHFQRAYQGEIRYLNINTTYNSSILLNYRQTECAFWTQYLP
TVIGVLVPTYPPTTEYWWEPKEPLQIAFWSMSVACFFLIVLVVICCIMWR
NAKRQSDRFYDEDVFINGEGLEPEQDTRGVDNAHMVTNHHALRSRDNIYE
YRDSPSTKTLASKAHTDTTSLRSPSSLAMTQKSSSQASLKSGISLKETNG
HLVKQSERAATPRSQQNGSTAKVASPPVEEKRLLQPLSSTPVTQLQAEPA
KRVPTAASVSGSSRSTTPVPSARSTTTHTTTATLSSQPAAQPRRTHLVEG
VPQTSV*
BS29191.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gli-PF | 956 | CG3903-PF | 1..956 | 1..956 | 5164 | 100 | Plus |
| Gli-PE | 956 | CG3903-PE | 1..956 | 1..956 | 5164 | 100 | Plus |
| Gli-PD | 956 | CG3903-PD | 1..956 | 1..956 | 5164 | 100 | Plus |
| Gli-PC | 956 | CG3903-PC | 1..956 | 1..956 | 5164 | 100 | Plus |
| Gli-PA | 956 | CG3903-PA | 1..956 | 1..956 | 5164 | 100 | Plus |
