BS29193.complete Sequence
1589 bp assembled on 2012-04-25
GenBank Submission: KX800854
> BS29193.complete
GAAGTTATCAGTCGACATGCCCTCCGGTATAAGACCCATCGATGTTCTGC
TGGAACGTGCCGGTGTGCGCGGCCACCAGCGTGCACCGTCCGACTCCAAG
GAGTTCCATGAGGTGACCAAACGGGATGCACTTCGTCTGCTGGAGCACGA
TGTGGACCGTCTGCTGGAGACCACTGAGAAGGCCCGCCAGCCTGCCCTCA
AGGCAGAAATGGGTCGTTTCGCCGATCTGTTCGGACGTTTCATTCAGGAA
GAGGGTCCCGCATTGGACTGGAACAAGATTCAGAAGCTGCCTGAGAATGC
TGTGATGAACTACTCGAATCTTAAGTCGCCCAAGAACGAGCAGATCCGCA
ACATGTTGGATAAATTGGTGGTCATCAAGCTGAACGGTGGTTTGGGCACC
TCAATGGGTTGCCATGGTCCCAAGAGTGTGATTCCTGTGCGTTCGGATCT
TACTTTCCTGGATCTGACCGTGCAGCAAATCGAGCATCTCAACAAGACCT
ACGATGCCAATGTTCCGCTGGTACTGATGAACTCCTTTAACACCGACGAG
GATACCGAGAAGATCGTGCGCAAGTACAAAGGATTCCGTGTGCAGATCCA
CACCTTCAACCAGAGCTGCTTCCCGCGCATTAGTCGCGAGCACTACCTGC
CGGTGGCCAAAGACTTTGATGTCGAAAAGGATATGGAAGCCTGGTATCCA
CCTGGACACGGTGACTTCTACGATACCTTCCGCAACTCTGGCCTGCTGAA
GAAGTTCATCGAGGAGGGCCGCGAGTATTGTTTCTTGTCCAACATCGATA
ACCTGGGCGCCACCGTCGATCTGAACATCCTCAATAAGCTGGTGGGCGAG
GAGCGGGCCACTACTCCAGTGGAGTTTGTCATGGAGGTCACCGACAAGAC
CCGTGCTGACGTTAAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGC
GCCTGTTGGAAATTGCTCAAGTGCCACCAGAGCATGTGGATGACTTTAAG
TCGGTTAAGACCTTCAAGTTCTTTAACACCAACAACATTTGGGCCAACCT
GGCAGCCATTGATCGCGTTTTGCGTGAGCGTACCTTAAACATGGAAATTA
TTGTGAACAACAAGACGCTGGAGAACGGAACCCGTGTCATTCAGCTGGAG
ACTGCTGTGGGTGCGGCCATGAAGTGCTTTGATGGCGCCATCGGCATCAA
TGTGCCGCGTTCCCGTTTCTTGCCCGTGAAGAAATCTTCAGATCTGCTGC
TGGTCATGTCAAATTTATATACGCTTAAGAACGGCAGCCTGGTAATGTCG
CCACAGCGAATGTTCCCTACCACGCCGCTCGTCAAGCTGGGAGAGAACCA
CTTCTCGAAGGTCAAGGAGTTCCTGGGTCGCTTTGCCAACATCCCGGACA
TCATTGAGCTGGATCACTTAACCGTGAGCGGAGATGTGACTTTCGGTCGT
GGCGTTTCTTTGCGCGGCACTGTGATCATCATTGCTAACCATGGCGATCG
TATCGATATCCCAGCTGGAGCCATTCTGGAGAACAAGATTGTATCTGGCA
ATATGCGCATCTTGGACCACTAAAAGCTTTCTAGACCAT
BS29193.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RE | 1557 | CG4347-PE | 1..1557 | 17..1573 | 7770 | 99.9 | Plus |
| UGP-RA | 1563 | CG4347-PA | 1..1563 | 17..1573 | 7675 | 99.6 | Plus |
| UGP-RD | 1536 | CG4347-PD | 28..1536 | 65..1573 | 7530 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-RE | 2686 | CG4347-RE | 254..1811 | 17..1574 | 7775 | 99.9 | Plus |
| UGP-RA | 2102 | CG4347-RA | 254..1817 | 17..1574 | 7680 | 99.6 | Plus |
| UGP-RD | 2093 | CG4347-RD | 322..1831 | 65..1574 | 7535 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9351917..9352329 | 1466..1054 | 2050 | 99.8 | Minus |
| 3L | 28110227 | 3L | 9352882..9353230 | 690..342 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9352601..9352827 | 917..691 | 1135 | 100 | Minus |
| 3L | 28110227 | 3L | 9353888..9354074 | 251..65 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 9352405..9352545 | 1055..915 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 9351742..9351850 | 1574..1466 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 9353738..9353831 | 343..250 | 470 | 100 | Minus |
| 3L | 28110227 | 3L | 9357581..9357630 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:35:33 has no hits.
BS29193.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:03 Download gff for
BS29193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 262..1816 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:52 Download gff for
BS29193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 254..1808 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:25 Download gff for
BS29193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UGP-RE | 254..1808 | 17..1571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:25 Download gff for
BS29193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9351745..9351850 | 1466..1571 | 100 | <- | Minus |
| 3L | 9351918..9352327 | 1056..1465 | 99 | <- | Minus |
| 3L | 9352405..9352543 | 917..1055 | 100 | <- | Minus |
| 3L | 9352602..9352827 | 691..916 | 100 | <- | Minus |
| 3L | 9352882..9353228 | 344..690 | 100 | <- | Minus |
| 3L | 9353738..9353829 | 252..343 | 100 | <- | Minus |
| 3L | 9353888..9354074 | 65..251 | 100 | <- | Minus |
| 3L | 9357583..9357630 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:52 Download gff for
BS29193.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9344845..9344950 | 1466..1571 | 100 | <- | Minus |
| arm_3L | 9345018..9345427 | 1056..1465 | 99 | <- | Minus |
| arm_3L | 9345505..9345643 | 917..1055 | 100 | <- | Minus |
| arm_3L | 9345702..9345927 | 691..916 | 100 | <- | Minus |
| arm_3L | 9345982..9346328 | 344..690 | 100 | <- | Minus |
| arm_3L | 9346838..9346929 | 252..343 | 100 | <- | Minus |
| arm_3L | 9346988..9347174 | 65..251 | 100 | <- | Minus |
| arm_3L | 9350683..9350730 | 17..64 | 100 | | Minus |
BS29193.pep Sequence
Translation from 16 to 1572
> BS29193.pep
MPSGIRPIDVLLERAGVRGHQRAPSDSKEFHEVTKRDALRLLEHDVDRLL
ETTEKARQPALKAEMGRFADLFGRFIQEEGPALDWNKIQKLPENAVMNYS
NLKSPKNEQIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLTFLDL
TVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQS
CFPRISREHYLPVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEE
GREYCFLSNIDNLGATVDLNILNKLVGEERATTPVEFVMEVTDKTRADVK
GGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNIWANLAAIDR
VLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSR
FLPVKKSSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVK
EFLGRFANIPDIIELDHLTVSGDVTFGRGVSLRGTVIIIANHGDRIDIPA
GAILENKIVSGNMRILDH*
BS29193.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UGP-PE | 518 | CG4347-PE | 1..518 | 1..518 | 2675 | 100 | Plus |
| UGP-PA | 520 | CG4347-PA | 1..520 | 1..518 | 2662 | 99.6 | Plus |
| UGP-PD | 511 | CG4347-PD | 8..511 | 15..518 | 2597 | 99.8 | Plus |
| UGP-PC | 513 | CG4347-PC | 8..513 | 15..518 | 2584 | 99.4 | Plus |
