BS29196.complete Sequence
686 bp assembled on 2012-04-25
GenBank Submission: KX802248
> BS29196.complete
GAAGTTATCAGTCGACATGACAATGCTAGAAGGCATGACGTCGATTGACC
TGGGCTCCAGTCCCATGCAAGAAACCACTGGCGACATGAACGACGTCCTC
CCCGATGAGCTCATGGAGTCGCCGGAGGAAAGATACGAGCGCCTACTGCG
TCGTGCCCAAGTCGAGGATTTGACGGAGGTGTCCGGCATCGGCTGCCTTT
ACCAGAGCGGCGTGGACCGCCTGGGTCGGCCTGTGATTGTGTTCTGCGGC
AAATGGTTCCCCGCCCAGAACATTGACCTGGAAAAGGCCTTGCTATATCT
GATTAAGCTACTGGATCCCATCGTTAAAGGAGACTATGTCATCTCGTACT
TCCACACGCTGACATCCACGAACAACTATCCATCGCTGCACTGGCTGCGT
GAGGTCTACAGTGTGTTGCCTTACAAATACAAGAAGAACCTGAAGGCCTT
CTATATCGTGCACCCCACTTTCTGGACTAAGATGATGACCTGGTGGTTCA
CCACGTTCATGGCGCCTGCCATCAAGGCCAAGGTGCACTCGCTTCCGGGT
GTGGAGCACCTGTACTCGGCCATCACCAAGGATCAGCTGGAAATTCCCGC
CTACATCACCGAGTACGACATGGCGACCAATGGCCTGCATTACTTCAATC
CTGTGCCGACTGCCTCGTAGAAGCTTTCTAGACCAT
BS29196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:34:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-RE | 678 | CG18812-PE | 1..655 | 17..671 | 3275 | 100 | Plus |
| CG18812-RA | 654 | CG18812-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
| CG18812-RD | 795 | CG18812-PD | 251..795 | 126..670 | 2725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:34:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-RE | 2143 | CG18812-RE | 507..1161 | 17..671 | 3275 | 100 | Plus |
| CG18812-RA | 2143 | CG18812-RA | 507..1161 | 17..671 | 3275 | 100 | Plus |
| CG18812-RD | 1719 | CG18812-RD | 359..904 | 126..671 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7719376..7719574 | 625..427 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 7719842..7719998 | 287..131 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 7719641..7719782 | 426..285 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 7722034..7722149 | 132..17 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 7719261..7719307 | 671..625 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:34:20 has no hits.
BS29196.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:02 Download gff for
BS29196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 504..1157 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:47 Download gff for
BS29196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 507..1160 | 17..670 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:14:01 Download gff for
BS29196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18812-RA | 507..1160 | 17..670 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:14:01 Download gff for
BS29196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7722034..7722149 | 17..132 | 100 | | Minus |
| 2R | 7719262..7719306 | 626..670 | 100 | <- | Minus |
| 2R | 7719376..7719574 | 427..625 | 100 | <- | Minus |
| 2R | 7719641..7719780 | 287..426 | 100 | <- | Minus |
| 2R | 7719843..7719996 | 133..286 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:47 Download gff for
BS29196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3606767..3606811 | 626..670 | 100 | <- | Minus |
| arm_2R | 3606881..3607079 | 427..625 | 100 | <- | Minus |
| arm_2R | 3607146..3607285 | 287..426 | 100 | <- | Minus |
| arm_2R | 3607348..3607501 | 133..286 | 100 | <- | Minus |
| arm_2R | 3609539..3609654 | 17..132 | 100 | | Minus |
BS29196.pep Sequence
Translation from 16 to 669
> BS29196.pep
MTMLEGMTSIDLGSSPMQETTGDMNDVLPDELMESPEERYERLLRRAQVE
DLTEVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLD
PIVKGDYVISYFHTLTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHP
TFWTKMMTWWFTTFMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEY
DMATNGLHYFNPVPTAS*
BS29196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18812-PA | 217 | CG18812-PA | 1..217 | 1..217 | 1160 | 100 | Plus |
| CG18812-PE | 225 | CG18812-PE | 1..217 | 1..217 | 1160 | 100 | Plus |
| CG18812-PB | 244 | CG18812-PB | 64..244 | 37..217 | 973 | 99.4 | Plus |
| CG18812-PD | 264 | CG18812-PD | 84..264 | 37..217 | 973 | 99.4 | Plus |
| CG18812-PF | 534 | CG18812-PF | 354..534 | 37..217 | 973 | 99.4 | Plus |
