BS29204.complete Sequence
1286 bp assembled on 2012-04-25
GenBank Submission: KX800800
> BS29204.complete
GAAGTTATCAGTCGACATGTCGCACGGTGGAGCCGGTGGCGGTCTGGGAG
CTCAAACTGTTGGAGCCGGCCAACTTGGAGGCGGTGCAGCGGCAGCTGGC
GGTGGAGAATACCGCGAACTCCACTGGACGGTCTCAAGCGTAATGGACTC
GTCTCGGGTCTCTACCTGCCTCATATCGATGCTGCTGATAGTCTACGGCA
GCTTTCGCTCCTTAAACATCGAGCAGGAGGCCCGCGAGCGGGAGCAGAAG
AAGCGAAATGAATCGATGACCAATCTTCTTACCGGCGAGCCCGTCGAGAA
GGAACCAACGGATAAATTCGCCACTCTGGACACGATGCATGCCCTCTGTT
TGCCCCTCGGAGCTTCCATCTCACTGCTCATCATGTTCTTCTTCTTCGAC
TCGATGCAGCTGCTCTTCGCCGTCTGCACAGCGATTATAGCCACCGTGGC
GCTGGCCTTTCTGCTGCTGCCCATGTGCCAGTACATCATCAGGCCATGCA
CAGATGGAAAGCGATTCTCCTTCGGATTCTGCGGTCGCTTCACAGCCGCG
GAGCTCTTCAGCTTTACGCTTTCGGTATCGATTGTGTGCATATGGGTGCT
CACTGGCCACTGGCTGCTAATGGATGCAATGGGCATGGGCCTGTGTGTGG
CATTCATAGCGTTTGTGCGTCTGCCCAGCTTGAAGGTGTCCACGCTGCTG
TTGACCGGCCTGCTCATCTACGACGTCTTCTGGGTATTCCTCTCCTCGTA
CATCTTCAGCACCAACGTGATGGTCAAGGTGGCGACGCGACCCGCCGATA
ATCCCGTGGGCATCGTGGCCAGAAAGTTGCATCTGGGTGGCATTGTGCGG
GACACACCAAAGCTGAATCTGCCCGGAAAGCTTGTTTTTCCCAGCCTGCA
CAATACCGGTCACTTCTCTATGCTGGGCCTGGGTGATGTGGTGATGCCGG
GCCTGTTGCTGTGCTTCGTCTTGCGGTATGATGCGTACAAGAAGGCGCAG
GGCGTCACATCGGATCCCACATTGTCACCACCCAGAGGAGTTGGCTCCCG
GTTGACATACTTTCATTGTTCCTTATTGGGTTATTTCTTGGGCCTGCTAA
CGGCGACGGTCAGCTCCGAGGTCTTTAAGGCGGCCCAGCCGGCGCTGCTG
TATCTAGTGCCCTTTACGTTATTGCCGCTCTTGCTGATGGCGTATCTGAA
GGGCGACCTGCGGCGCATGTGGAGCGAGCCGTTTATCGCGCAACAACCAT
CAAAACAACTGGAAGTCTGAAAGCTTTCTAGACCAT
BS29204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SppL-RF | 1254 | CG17370-PF | 1..1254 | 17..1270 | 6270 | 100 | Plus |
SppL-RC | 1254 | CG17370-PC | 1..1254 | 17..1270 | 6270 | 100 | Plus |
SppL-RB | 1254 | CG17370-PB | 1..1254 | 17..1270 | 6270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SppL-RF | 2561 | CG17370-RF | 602..1856 | 16..1270 | 6275 | 100 | Plus |
SppL-RC | 2164 | CG17370-RC | 205..1459 | 16..1270 | 6275 | 100 | Plus |
SppL-RB | 2101 | CG17370-RB | 649..1903 | 16..1270 | 6275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25886565..25887019 | 626..1080 | 2275 | 100 | Plus |
3R | 32079331 | 3R | 25885537..25885829 | 16..308 | 1465 | 100 | Plus |
3R | 32079331 | 3R | 25886307..25886498 | 435..626 | 960 | 100 | Plus |
3R | 32079331 | 3R | 25885895..25886020 | 309..434 | 630 | 100 | Plus |
3R | 32079331 | 3R | 25887110..25887232 | 1080..1202 | 615 | 100 | Plus |
3R | 32079331 | 3R | 25887296..25887366 | 1200..1270 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:40:52 has no hits.
BS29204.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:26 Download gff for
BS29204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17370-RC | 204..1456 | 17..1269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:21 Download gff for
BS29204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SppL-RA | 449..1701 | 17..1269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:38 Download gff for
BS29204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SppL-RB | 650..1902 | 17..1269 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:38 Download gff for
BS29204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25887298..25887365 | 1202..1269 | 100 | | Plus |
3R | 25885895..25886020 | 309..434 | 100 | -> | Plus |
3R | 25886307..25886498 | 435..626 | 100 | -> | Plus |
3R | 25885538..25885829 | 17..308 | 100 | -> | Plus |
3R | 25886566..25887019 | 627..1080 | 100 | -> | Plus |
3R | 25887111..25887231 | 1081..1201 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:21 Download gff for
BS29204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21711260..21711551 | 17..308 | 100 | -> | Plus |
arm_3R | 21711617..21711742 | 309..434 | 100 | -> | Plus |
arm_3R | 21712029..21712220 | 435..626 | 100 | -> | Plus |
arm_3R | 21712288..21712741 | 627..1080 | 100 | -> | Plus |
arm_3R | 21712833..21712953 | 1081..1201 | 100 | -> | Plus |
arm_3R | 21713020..21713087 | 1202..1269 | 100 | | Plus |
BS29204.pep Sequence
Translation from 16 to 1269
> BS29204.pep
MSHGGAGGGLGAQTVGAGQLGGGAAAAGGGEYRELHWTVSSVMDSSRVST
CLISMLLIVYGSFRSLNIEQEAREREQKKRNESMTNLLTGEPVEKEPTDK
FATLDTMHALCLPLGASISLLIMFFFFDSMQLLFAVCTAIIATVALAFLL
LPMCQYIIRPCTDGKRFSFGFCGRFTAAELFSFTLSVSIVCIWVLTGHWL
LMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFLSSYIFSTN
VMVKVATRPADNPVGIVARKLHLGGIVRDTPKLNLPGKLVFPSLHNTGHF
SMLGLGDVVMPGLLLCFVLRYDAYKKAQGVTSDPTLSPPRGVGSRLTYFH
CSLLGYFLGLLTATVSSEVFKAAQPALLYLVPFTLLPLLLMAYLKGDLRR
MWSEPFIAQQPSKQLEV*
BS29204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SppL-PF | 417 | CG17370-PF | 1..417 | 1..417 | 2148 | 100 | Plus |
SppL-PC | 417 | CG17370-PC | 1..417 | 1..417 | 2148 | 100 | Plus |
SppL-PB | 417 | CG17370-PB | 1..417 | 1..417 | 2148 | 100 | Plus |
SppL-PA | 417 | CG17370-PA | 1..417 | 1..417 | 2148 | 100 | Plus |
SppL-PE | 422 | CG17370-PE | 1..422 | 1..417 | 2127 | 98.6 | Plus |