BS29215.complete Sequence
1943 bp assembled on 2012-10-18
GenBank Submission: KX803206
> BS29215.complete
GAAGTTATCAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAG
CTCGCCAGGATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGC
GAGGACGATACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATC
CGACCACGATGAGATCTTCCTCAAGGGATTGCTGCGTAGTAACTCCAACA
CGCCCCACAAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCA
CTATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCAT
CCGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAGCTCGCCAAGC
TTCTCGCCCAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATA
GGAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCA
ACTAGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGG
ACGTCCTCAACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTG
CGCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATT
CAAGCAGCTGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAAC
AGAGCATGCTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCC
GTTCGCACTCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAA
TCTCACCCTCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTC
GCTATACTGTGAGTGGGGGTCAGGTAAAACAGAATGGCATCGCGAGTCTC
GAGACGGGCAAGAAACTGACGTGCTACATGCGTGCCCTTTTCACATACAA
TCCATCCGAAGATTCCTTGCTGCCATGCAGGGATATTGGATTGCCCTTCA
AGTCGGGCGACATTTTGCAGATCATCAACGTAAAGGATCCCAACTGGTGG
CAGGCCAAGAACATTACTGCCGAATCTGACAAAATTGGACTCATACCATC
CCAAGAGCTGGAGGAGCGGCGCAAAGCCTTCGTGGCCCCCGAGGCGGACT
ACGTTCACAAGATTGGCATTTGCGGAACAAGAATCTCGAAGCGAAAGCGC
AAGACCATGTACCGATCTGTGGCCAATTGCGAGTTCGACAAGGCGGAGCT
GCTGCTCTATGAGGAGGTCACGCGGATGCCGCCGTTCCGCAGGAAAACCC
TGGTTCTCATCGGTGTTTCCGGGGTGGGAAGACGTACGCTCAAGAATCGG
CTGATCAACAGCGATGTGGACAAGTTCGGAGCGGTCATTCCACATACCAG
TCGCCCCAAGCGCGCCTTGGAGGAGAACGGCAGTAGCTACTGGTTCATGG
ACCGCGAGGAAATGGAAGAGGCCGTGCGGAACAACGAGTTCCTGGAGTAC
GGCGAGCACAATGGCAATCTGTACGGCACGCATTTGCAGTCCATCAAGGA
TGTGATCAACAGTGGGCGCATGTGCATCCTGGATTGTGCACCGAATGCCC
TGAAGATCCTGCACAACAGCCAGGAACTGATGCCTTTTGTCATCTTTGTG
GCAGCGCCTGGCATGGAGCAGCTCAAGACCATCTATGCGGATCGCAGGGC
CACGGGCTCCAACCGGAATTTATCTTTTGATCGCCAGAGTTCCATAAGAT
TCAGCTCCAGACGCGCCCGTACGCTCGAGTCCCTAGCGTCGTTGTATGAG
GACGACGACCTTGTCGCCACCGTCGAGGAGAGCAGCTTCGTCCAGCGCAA
GTATGAGAAATACTTCGACATGGTCATCGTGAACGAGGACTTCGATGAGA
CGTTCCGCCAGGTGGTGGAAACGCTGGATCAGATGAGCCACGAGGAGCAG
TGGGTGCCTGTCAACTGGATCTACTAGAAGCTTTCTAGACCAT
BS29215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vari-RB | 1911 | CG9326-PB | 1..1911 | 17..1927 | 9555 | 100 | Plus |
| vari-RE | 1836 | CG9326-PE | 1..1659 | 17..1675 | 8295 | 100 | Plus |
| vari-RF | 1410 | CG9326-PF | 1..1410 | 518..1927 | 7050 | 100 | Plus |
| vari-RE | 1836 | CG9326-PE | 1660..1836 | 1751..1927 | 885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vari-RB | 2610 | CG9326-RB | 285..2197 | 17..1929 | 9565 | 100 | Plus |
| vari-RC | 2320 | CG9326-RC | 28..1737 | 220..1929 | 8550 | 100 | Plus |
| vari-RF | 2379 | CG9326-RF | 88..1796 | 221..1929 | 8545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20791167..20791664 | 871..374 | 2490 | 100 | Minus |
| 2L | 23513712 | 2L | 20789721..20790052 | 1675..1344 | 1660 | 100 | Minus |
| 2L | 23513712 | 2L | 20790125..20790335 | 1343..1133 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 20789245..20789425 | 1929..1749 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 20790391..20790558 | 1132..965 | 840 | 100 | Minus |
| 2L | 23513712 | 2L | 20792113..20792267 | 374..220 | 775 | 100 | Minus |
| 2L | 23513712 | 2L | 20796653..20796758 | 122..17 | 530 | 100 | Minus |
| 2L | 23513712 | 2L | 20790622..20790721 | 970..871 | 500 | 100 | Minus |
| 2L | 23513712 | 2L | 20796037..20796135 | 220..122 | 495 | 100 | Minus |
| 2L | 23513712 | 2L | 20789585..20789660 | 1751..1676 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:55:30 has no hits.
BS29215.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:13 Download gff for
BS29215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RB | 283..2193 | 17..1927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:33 Download gff for
BS29215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RB | 285..2195 | 17..1927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:57 Download gff for
BS29215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vari-RB | 285..2195 | 17..1927 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:57 Download gff for
BS29215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20796653..20796758 | 17..122 | 100 | | Minus |
| 2L | 20789247..20789423 | 1751..1927 | 100 | <- | Minus |
| 2L | 20789586..20789660 | 1676..1750 | 100 | <- | Minus |
| 2L | 20789721..20790052 | 1344..1675 | 100 | <- | Minus |
| 2L | 20790125..20790335 | 1133..1343 | 100 | <- | Minus |
| 2L | 20790391..20790552 | 971..1132 | 100 | <- | Minus |
| 2L | 20790622..20790720 | 872..970 | 100 | <- | Minus |
| 2L | 20791167..20791664 | 374..871 | 100 | <- | Minus |
| 2L | 20792114..20792266 | 221..373 | 100 | <- | Minus |
| 2L | 20796037..20796134 | 123..220 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:33 Download gff for
BS29215.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20796653..20796758 | 17..122 | 100 | | Minus |
| arm_2L | 20789247..20789423 | 1751..1927 | 100 | <- | Minus |
| arm_2L | 20789586..20789660 | 1676..1750 | 100 | <- | Minus |
| arm_2L | 20789721..20790052 | 1344..1675 | 100 | <- | Minus |
| arm_2L | 20790125..20790335 | 1133..1343 | 100 | <- | Minus |
| arm_2L | 20790391..20790552 | 971..1132 | 100 | <- | Minus |
| arm_2L | 20790622..20790720 | 872..970 | 100 | <- | Minus |
| arm_2L | 20791167..20791664 | 374..871 | 100 | <- | Minus |
| arm_2L | 20792114..20792266 | 221..373 | 100 | <- | Minus |
| arm_2L | 20796037..20796134 | 123..220 | 100 | <- | Minus |
BS29215.pep Sequence
Translation from 16 to 1926
> BS29215.pep
MVRWSARSRRQARQDKVELLARNNKVNGEDDTSDNAAFRNSTDLSDHDEI
FLKGLLRSNSNTPHKELMLNPTEPQPVPLFLPAHLNNKPICDDIIRKFSP
SRRLESRELAKLLAQPHFRALLRAHDEIGALYEQRLKAAGGSTSQLEIAS
QRQTGGYLFTEDVLNTKMPVETIKMVGLRRDPSKPLGLTVELDEFKQLVV
ARILAGGVIDKQSMLHVGDVILEVNGTPVRTPDELQVEVSRAKENLTLKI
GPNVDEEIKSGRYTVSGGQVKQNGIASLETGKKLTCYMRALFTYNPSEDS
LLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITAESDKIGLIPSQELEE
RRKAFVAPEADYVHKIGICGTRISKRKRKTMYRSVANCEFDKAELLLYEE
VTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFGAVIPHTSRPKRA
LEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVINSG
RMCILDCAPNALKILHNSQELMPFVIFVAAPGMEQLKTIYADRRATGSNR
NLSFDRQSSIRFSSRRARTLESLASLYEDDDLVATVEESSFVQRKYEKYF
DMVIVNEDFDETFRQVVETLDQMSHEEQWVPVNWIY*
BS29215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vari-PB | 636 | CG9326-PB | 1..636 | 1..636 | 3275 | 100 | Plus |
| vari-PD | 615 | CG9326-PD | 1..615 | 1..636 | 3141 | 96.7 | Plus |
| vari-PE | 611 | CG9326-PE | 1..611 | 1..636 | 3121 | 96.1 | Plus |
| vari-PF | 469 | CG9326-PF | 1..469 | 168..636 | 2418 | 100 | Plus |
| vari-PC | 469 | CG9326-PC | 1..469 | 168..636 | 2418 | 100 | Plus |
