BS29228.complete Sequence
1340 bp assembled on 2012-04-25
GenBank Submission: KX804512
> BS29228.complete
GAAGTTATCAGTCGACATGAAAAACATCACCAGCTCGAGCACTTGCAGCA
CTGGGCTGCTGCAATTGCAGAACAACCTGAGCTGCAGCGAGTTGGAAGTT
GCCGAGAAGACAGAACAACAGGCAGTTGGACCCGGCACCATACCATCACC
GTGGACACCAGTGAATGCCGGTCCTCCAGGCGCACTTGGATCGGCAGACA
CAAATGGCAGCATGGTGGATAGCAAAAACCTGGATGTCGGTGATATGAGC
GATGACGAAAAGGACTTGTCATCCGCTGATGCCGAAGGTGTATGGAGTCC
AGATATCGAGCAGAGCTTTCAAGAGGCTTTATCTATATATCCGCCGTGCG
GACGTAGAAAAATCATTTTATCCGACGAGGGTAAAATGTACGGTCGCAAC
GAGCTAATCGCACGATATATAAAACTGCGCACAGGCAAAACGAGAACCAG
GAAGCAAGTCAGTTCGCACATCCAAGTGCTGGCTCGCCGTAAACTCCGCG
AGATCCAGGCGAAAATCAAAGTGCAATTCTGGCAACCTGGACTACAGCCA
AGCACGTCCCAAGACATCAAGCCCTTCCCCCAGCCGCCGTATCCAGCTGG
CAAAACGTCGACTGCGGTTTCCGGGGACGAAACTGGAATTCCGCCCTCAC
AATTGCCCTGGGAAGGACGAGCCATTGCCACGCACAAATTCCGCTTACTC
GAGTTTACGGCGTTCATGGAAATCCAGAGAGATGAAATTTATCACCGGCA
TCTATTCGTTCAACTTGGCGGCAAGCCATCCTTTTCCGATCCATTGCTTG
AGACTGTTGATATACGGCAAATATTCGACAAGTTTCCGGAGAAATCTGGG
GGACTTAAAGATCTCTACGAAAAGGGTCCACAGAATGCGTTTTACCTAGT
TAAATGCTGGGCGGACCTGAATACCGATCTAACAACCGGCAGCGAAACGG
GTGATTTCTATGGCGTAACCAGCCAATACGAAAGCAACGAGAATGTCGTG
CTCGTGTGCTCCACAATCGTTTGCTCCTTTGGCAAGCAAGTGGTGGAGAA
GGTGGAAAGCGAGTACTCTCGACTGGAGAACAATCGCTACGTCTATCGCA
TTCAACGCTCCCCCATGTGCGAGTACATGATCAACTTTATTCAGAAGCTG
AAGAACCTACCGGAACGCTATATGATGAACAGTGTGCTGGAAAACTTTAC
AATATTGCAAGTAATGAGGGCCCGCGAGACGCAGGAGACACTGTTGTGCA
TAGCCTATGTGTTTGAGGTGGCGGCCCAGAACAGCGGCACCACCCATCAC
ATATACCGTCTAATTAAGGAATAGAAGCTTTCTAGACCAT
BS29228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sd-RM | 1308 | CG8544-PM | 1..1308 | 17..1324 | 6540 | 100 | Plus |
| sd-RI | 1308 | CG8544-PI | 1..1308 | 17..1324 | 6540 | 100 | Plus |
| sd-RH | 1308 | CG8544-PH | 1..1308 | 17..1324 | 6540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sd-RM | 5331 | CG8544-RM | 790..2098 | 16..1324 | 6545 | 100 | Plus |
| sd-RI | 3280 | CG8544-RI | 698..2006 | 16..1324 | 6545 | 100 | Plus |
| sd-RH | 3237 | CG8544-RH | 655..1963 | 16..1324 | 6545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15824042..15824280 | 976..1214 | 1195 | 100 | Plus |
| X | 23542271 | X | 15823308..15823482 | 565..739 | 875 | 100 | Plus |
| X | 23542271 | X | 15823750..15823924 | 801..975 | 875 | 100 | Plus |
| X | 23542271 | X | 15819996..15820136 | 254..394 | 705 | 100 | Plus |
| X | 23542271 | X | 15819593..15819724 | 123..254 | 660 | 100 | Plus |
| X | 23542271 | X | 15820422..15820553 | 392..523 | 660 | 100 | Plus |
| X | 23542271 | X | 15824335..15824448 | 1211..1324 | 570 | 100 | Plus |
| X | 23542271 | X | 15814186..15814295 | 16..125 | 550 | 100 | Plus |
| X | 23542271 | X | 15823619..15823681 | 740..802 | 315 | 100 | Plus |
| X | 23542271 | X | 15823186..15823227 | 523..564 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:47:22 has no hits.
BS29228.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:27 Download gff for
BS29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sd-RI | 272..1579 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:26 Download gff for
BS29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sd-RH | 656..1963 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:56 Download gff for
BS29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sd-RH | 656..1963 | 17..1324 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:56 Download gff for
BS29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15823308..15823482 | 565..739 | 100 | -> | Plus |
| X | 15823752..15823924 | 803..975 | 100 | -> | Plus |
| X | 15820423..15820553 | 393..523 | 100 | -> | Plus |
| X | 15823187..15823227 | 524..564 | 100 | -> | Plus |
| X | 15814187..15814295 | 17..125 | 100 | -> | Plus |
| X | 15819596..15819723 | 126..253 | 100 | -> | Plus |
| X | 15819996..15820134 | 254..392 | 100 | -> | Plus |
| X | 15823619..15823681 | 740..802 | 100 | -> | Plus |
| X | 15824042..15824276 | 976..1210 | 100 | -> | Plus |
| X | 15824335..15824448 | 1211..1324 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:26 Download gff for
BS29228.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15718368..15718481 | 1211..1324 | 100 | | Plus |
| arm_X | 15708220..15708328 | 17..125 | 100 | -> | Plus |
| arm_X | 15713629..15713756 | 126..253 | 100 | -> | Plus |
| arm_X | 15714029..15714167 | 254..392 | 100 | -> | Plus |
| arm_X | 15714456..15714586 | 393..523 | 100 | -> | Plus |
| arm_X | 15717220..15717260 | 524..564 | 100 | -> | Plus |
| arm_X | 15717341..15717515 | 565..739 | 100 | -> | Plus |
| arm_X | 15717652..15717714 | 740..802 | 100 | -> | Plus |
| arm_X | 15717785..15717957 | 803..975 | 100 | -> | Plus |
| arm_X | 15718075..15718309 | 976..1210 | 100 | -> | Plus |
BS29228.pep Sequence
Translation from 16 to 1323
> BS29228.pep
MKNITSSSTCSTGLLQLQNNLSCSELEVAEKTEQQAVGPGTIPSPWTPVN
AGPPGALGSADTNGSMVDSKNLDVGDMSDDEKDLSSADAEGVWSPDIEQS
FQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSS
HIQVLARRKLREIQAKIKVQFWQPGLQPSTSQDIKPFPQPPYPAGKTSTA
VSGDETGIPPSQLPWEGRAIATHKFRLLEFTAFMEIQRDEIYHRHLFVQL
GGKPSFSDPLLETVDIRQIFDKFPEKSGGLKDLYEKGPQNAFYLVKCWAD
LNTDLTTGSETGDFYGVTSQYESNENVVLVCSTIVCSFGKQVVEKVESEY
SRLENNRYVYRIQRSPMCEYMINFIQKLKNLPERYMMNSVLENFTILQVM
RARETQETLLCIAYVFEVAAQNSGTTHHIYRLIKE*
BS29228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sd-PM | 435 | CG8544-PM | 1..435 | 1..435 | 2272 | 100 | Plus |
| sd-PI | 435 | CG8544-PI | 1..435 | 1..435 | 2272 | 100 | Plus |
| sd-PH | 435 | CG8544-PH | 1..435 | 1..435 | 2272 | 100 | Plus |
| sd-PK | 440 | CG8544-PK | 1..440 | 1..435 | 2256 | 98.9 | Plus |
| sd-PS | 440 | CG8544-PS | 1..440 | 1..435 | 2256 | 98.9 | Plus |
