BS29248.complete Sequence
3236 bp assembled on 2012-06-11
GenBank Submission: KX800916
> BS29248.complete
GAAGTTATCAGTCGACATGGATTCACGAATGCTAAATGTGTTCCAAGGAG
ATACCTTTGAGGCAAATTATACCAAATACGAGTCTGAGCCGATATTCTGG
TCATCTAATGATGAACTGCAACTGACAGATACACTGAGCGGCATCCTACC
CATCGCGCCCACAGACGAATCACTGCTCAACCATAACCGGGAGGAAGATC
TGCAAAACAGAAAGAATCTGCTGATTTACAACGACTTTCTGAAACAGGAG
CTCAGCAACCATGATGCCAATGAGCTAAATGCCCAGGTCTATCGGTCCAT
CGCCGACAGCGGGGGCGAGATTGCCTATGAGCAGCAGCGCCAGATCAGCG
CCATTGTGGAGTACGACAAAGAAGATATTAAAATCGACGGCCTTACGGAG
GAGGAGGACATACAAAGCCAGTCCACATTTCGCACCCGCACAGACAGCTC
TTCGATTGGTGACTATGAATCGCACTCTAGCGACTATGATGATGAATTTG
ACATTGTCAACGAAGAAAAAAGTCCAAGGCTGCAGGTTGTCCATAACAAT
ATCGGCAACTTGCAGAGCTCCTGTGAGCGCAAGGGACGGACGCTCAGTAC
TAACACTATTATCTCCGAAGTAGACGCATTGGGGCTAAGTATTGATGTTA
ATAACTTTGACCTAGCTGATTTTATTACCAAAGACGATTTTGCTGAGAAT
TTAAACGCCTGTCGCAAAAAGGAATCTCTGCAAGCACAGGCGCAAATTAA
ATCTAATACTTTAGCAGATGTTCCCATACTTCTTAATCCACCGGTTGCCA
CAATTGTGGCAAAACCCGGGGTCCCATCCTCTAAACCTGGCGATTCTGAT
TATGACTCTGACTCGATTATCGACGTTGAAACTGTCGATGTACTCGATAT
GAATATGGCCAATATCTGGTCAATAGATAAGCCGGCAAAAATGGGCCAAA
CTCCCGATGAATTACGCTATGTGGACAATGTAAAGGCCGATCCCTCTTGG
AGTCCGAGATCCGCAAAAAAGACCACACCTACTATCAAAGAGAATAAGCC
GGAACAACTGGGGAACCATCAGCTCGCGGTCCCAGCATCAAACAAACCGA
AGCATAAGAATATTTGCCTGGTGCCTAATAAAAAACAGTGCGATTTTCTT
AAACGTAAGGTTGGTAGTCCCTCCTTGTCCAAGCTAACTAAGGCGACAAC
AAAAAAAGCGACTGAGTCTATGAGCAACAAGCAGCCGTCAGTAAAAAATA
CTCAATGCACGGGTCTCGGATTGGGTGGAAAAAACCTTTCGCTTCTGAAG
CAGGAGAGGGACGCCGCATTATCGGTGTGTGCTGCAAAACCTATAGCACC
TCCAACCCTTTCGACAACAACCCCGACTTTGACACCGCCAGCAAAGCGAA
AGCTAAATCTAGAGGAATATAAACAGCGTCGTTGTGGCGGTGTGGGGGCT
GTGTATCCTAAACCAACTCCGCCCAAGCAGGCGAAAATAGAGGTTGCCGC
CAAACGCATTGCTCCTACCCCGGTTTCAAAACCAACACCTTCACCAAAAA
AAGCGGAAATAGTCAATATTGTAAACAGCCTTAAATGTCCTCGCACAGAA
CAATCTTCTTTGCCCATGGATCCCATTACCATGGCCAAGAACAAGGTGCT
GCGTATGCTAGAGATGAAACGTGCCCAACAGCTAAAAATAATCGATTCCC
GCGTATCAGCCAAGGTGCCACGCGTAACCAAGCTGCCGCCACTTAAGGAT
ATTGTAAAGGACACCTACTGCATGGAAACTGAGGATCCTGGCACAGAGAT
AGCGCCACTCAGCAACAAACTCCACCCGGACTATGAGGAGATTATAATAG
TTTCAGCTAGTTGCAATACAGACATAACAATACCTCCCAATCAATTAAGC
AAGGCCTCCCCTCGCTCTCTCTTAAAGTCATCAGTTTTGCTGTACAACAT
CTCAAACGGCCAGGATGCCAATAAGAACATGAGCAACTCCCTAATAGCCA
GCATCCAAAGCGAGGTCGCCAGGCAAACGAGTAACACTACTCTCTCGACG
ATACAGTCCAACGCAACAAAAGTTATGTCTTCCGCTGATAAGAATTGTCA
GCATGGCGAGGACATGGTCATCATGCACTTACCCAAGGATCGGGTGCGAA
AAACTCTTGTGAGCATTGCAACCCAAACTGATCTGCAACCCGAATTTCCC
CTATTGACGCTGCCCCCAAAGCGACAGTCTCGAGAGCGTACGCGTCGAAA
TTATCGCAGGCGACGGACACAAGGCTCGGGCTCAAATATGTCCACTTCTT
CGAGTGACTTTTCCTCCGACTGCAGCAGCTTGGTGTCACACAGATCTCGC
TCACAATACGATTCGATTGATCAGCTGCGTAACTTAGATGTAGCAGCCAC
GTGTGGGGGCAGTATTGGAAACGGCGGTTATTCTTCTCGTAGCACTCAAC
GCCATCGCAGCTCGGTGAGTTCTTCATCTTACTCAGAGAATGGACAGTAC
AGGCGCAGGCAGCGCCGCACGAGTTACAACAAGCGTAGATCTAGAAACCA
AAAGCGGGGCAGTACTTCCTCGTCATGCTCGGGCTCCGAAAAAAGCGATC
GCGAACGTAGCCGCAGCCCACACAGAAAATTGCGCCACTCGCGGTCCCGG
TCGCGCTCAAAATCTGATACACGCTACCCTAACAACAACTCCTCCTCCAA
TAACAACAATCGGCGAGGATTTTTTGATCGTAACGTGTCGCAACCGGCCG
TTGAAGAGCGGCGAATCGTCTACGTCGGTCGCATTGAGCAAGAAACCACC
AAGGAAATTCTGCGTCGTAAATTTCTGCCCTATGGAAGCATTAAACAAAT
AACAATACACTACAAGGAAAATGGAATGAAGTATGGGTTCGTTACGTACG
AAAGAGCGCAGGACGCATTCACGGCCATTGACACGAGTCATAGAGACTCG
CAAATAAGCATGTATGACATAAGTTTTGGAGGAAGACGTGCCTTCTGTCG
TTCATCTTACGCTGACTTGGATAATGCTGGCATTAATAATTACAACTCGT
ATGTGTTTCCCAAGGAAGCACCAGCACCGAATGTAGTCGAGGACTCTTTC
GAAGCTTTGTTGCTTCAGGTAAAAGCAAAGTTAAACGCGGGCAAGTCACC
GGTAGGTTCATCTACGCTGGAGGCACCATCAGCTTCCGGTACTGTACTTC
AGGGCCACAGTCAGATGTGAAAGCTTTCTAGACCAT
BS29248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srl-RE | 3204 | CG9809-PE | 1..3204 | 17..3220 | 16020 | 100 | Plus |
| srl-RB | 3204 | CG9809-PB | 1..3204 | 17..3220 | 16020 | 100 | Plus |
| srl-RD | 3177 | CG9809-PD | 204..3177 | 247..3220 | 14870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:34:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srl-RE | 4237 | CG9809-RE | 457..3660 | 17..3220 | 16020 | 100 | Plus |
| srl-RB | 4568 | CG9809-RB | 383..3586 | 17..3220 | 16020 | 100 | Plus |
| srl-RD | 4136 | CG9809-RD | 586..3559 | 247..3220 | 14870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4423933..4425770 | 2874..1037 | 9175 | 99.9 | Minus |
| 3R | 32079331 | 3R | 4425831..4426653 | 1042..220 | 4115 | 100 | Minus |
| 3R | 32079331 | 3R | 4423465..4423665 | 3220..3020 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 4423728..4423874 | 3020..2874 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 4426723..4426828 | 220..115 | 530 | 100 | Minus |
| 3R | 32079331 | 3R | 4426882..4426979 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:34:21 has no hits.
BS29248.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:59 Download gff for
BS29248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spargel-RB | 377..3579 | 17..3219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:12 Download gff for
BS29248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spargel-RB | 383..3585 | 17..3219 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:56 Download gff for
BS29248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| srl-RB | 383..3585 | 17..3219 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:56 Download gff for
BS29248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4423466..4423664 | 3021..3219 | 100 | <- | Minus |
| 3R | 4423728..4423873 | 2875..3020 | 100 | <- | Minus |
| 3R | 4423933..4425764 | 1043..2874 | 100 | <- | Minus |
| 3R | 4425831..4426652 | 221..1042 | 100 | <- | Minus |
| 3R | 4426723..4426828 | 115..220 | 100 | <- | Minus |
| 3R | 4426882..4426979 | 17..114 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:12 Download gff for
BS29248.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 249188..249386 | 3021..3219 | 100 | <- | Minus |
| arm_3R | 249450..249595 | 2875..3020 | 100 | <- | Minus |
| arm_3R | 249655..251486 | 1043..2874 | 100 | <- | Minus |
| arm_3R | 251553..252374 | 221..1042 | 100 | <- | Minus |
| arm_3R | 252445..252550 | 115..220 | 100 | <- | Minus |
| arm_3R | 252604..252701 | 17..114 | 100 | | Minus |
BS29248.pep Sequence
Translation from 16 to 3219
> BS29248.pep
MDSRMLNVFQGDTFEANYTKYESEPIFWSSNDELQLTDTLSGILPIAPTD
ESLLNHNREEDLQNRKNLLIYNDFLKQELSNHDANELNAQVYRSIADSGG
EIAYEQQRQISAIVEYDKEDIKIDGLTEEEDIQSQSTFRTRTDSSSIGDY
ESHSSDYDDEFDIVNEEKSPRLQVVHNNIGNLQSSCERKGRTLSTNTIIS
EVDALGLSIDVNNFDLADFITKDDFAENLNACRKKESLQAQAQIKSNTLA
DVPILLNPPVATIVAKPGVPSSKPGDSDYDSDSIIDVETVDVLDMNMANI
WSIDKPAKMGQTPDELRYVDNVKADPSWSPRSAKKTTPTIKENKPEQLGN
HQLAVPASNKPKHKNICLVPNKKQCDFLKRKVGSPSLSKLTKATTKKATE
SMSNKQPSVKNTQCTGLGLGGKNLSLLKQERDAALSVCAAKPIAPPTLST
TTPTLTPPAKRKLNLEEYKQRRCGGVGAVYPKPTPPKQAKIEVAAKRIAP
TPVSKPTPSPKKAEIVNIVNSLKCPRTEQSSLPMDPITMAKNKVLRMLEM
KRAQQLKIIDSRVSAKVPRVTKLPPLKDIVKDTYCMETEDPGTEIAPLSN
KLHPDYEEIIIVSASCNTDITIPPNQLSKASPRSLLKSSVLLYNISNGQD
ANKNMSNSLIASIQSEVARQTSNTTLSTIQSNATKVMSSADKNCQHGEDM
VIMHLPKDRVRKTLVSIATQTDLQPEFPLLTLPPKRQSRERTRRNYRRRR
TQGSGSNMSTSSSDFSSDCSSLVSHRSRSQYDSIDQLRNLDVAATCGGSI
GNGGYSSRSTQRHRSSVSSSSYSENGQYRRRQRRTSYNKRRSRNQKRGST
SSSCSGSEKSDRERSRSPHRKLRHSRSRSRSKSDTRYPNNNSSSNNNNRR
GFFDRNVSQPAVEERRIVYVGRIEQETTKEILRRKFLPYGSIKQITIHYK
ENGMKYGFVTYERAQDAFTAIDTSHRDSQISMYDISFGGRRAFCRSSYAD
LDNAGINNYNSYVFPKEAPAPNVVEDSFEALLLQVKAKLNAGKSPVGSST
LEAPSASGTVLQGHSQM*
BS29248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| srl-PE | 1067 | CG9809-PE | 1..1067 | 1..1067 | 5462 | 100 | Plus |
| srl-PB | 1067 | CG9809-PB | 1..1067 | 1..1067 | 5462 | 100 | Plus |
| srl-PD | 1058 | CG9809-PD | 1..1058 | 1..1067 | 5395 | 99.2 | Plus |
