BS29250.complete Sequence
1541 bp assembled on 2012-04-25
GenBank Submission: KX805134
> BS29250.complete
GAAGTTATCAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATG
GAAATTCTTCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACA
ATGTCCGGCGACAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGC
AGGCGTTGCCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTG
AGGGATATGGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGC
TCCAATTCCAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTC
TAATATCAGCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGA
ACGATGGAAATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTG
GCTCCACACGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACAT
AATGCCCCGGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCA
GTTCCGGCCGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTAT
AGATCATCGAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAAC
AGAAGACATGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATT
ATAGGCTGGAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAG
AATATAGCTGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCT
TCAGGCGCGTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGC
GTGCCGAGGAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTG
GCCCGCGTGGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAA
GATCCGTGCCACCGAGATCGAGGCAACGGCACTGCGGGAAGAAGCCGCCC
GACTGCGTGTCCTGTGTGACAAGCAGGCCAATGACCTCCATCGCACCGAG
GAACAGTTGGAGCTGGCGCGCGACCAAATCGGCGTCCTGCAACAGGAGCA
CGAGGAGCAGGCACAGGCACTGCGCCGCCACGAACAGGAGAAGAAGTCCA
CCGAGGAGCTGATGCTGGAGCTGGGCCGGGAACTGCAGCGTGCTCGCGAG
GAGAGTGGAGCCCGGGCAATGCCGACCACATCGCCGGAGAGCATAAGACT
GGAGGAGCTGCATCAGGAGCTCGAGGAGATGCGCCAGAAGAACCGAACCC
TCGAAGAACAGAACGAGGAGCTGCAGGCCACGATGCTGACCAACCAGGCC
ACCATGCTGACAAATGGCGTGGAGCAGGGTCGCCATCTGCTGAACGGAAC
ACTCAACAGTTTGGCTCAGGAGCTCGAGGAGATGTCACAAGCCCAGCTAC
AACAGGCCTTCCAGGAAAAGGAGGATGAAAATGTTCGGCTTAAGCACTAT
ATTGATACCATTCTACTCAACATCGTGGAGAACTATCCTCAATTGCTGGA
AGTCAAGCCCATGGAGCGAAAGTAGAAGCTTTCTAGACCAT
BS29250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RA | 1509 | CG33991-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
| nuf-RC | 1509 | CG33991-PC | 1..1509 | 17..1525 | 7545 | 100 | Plus |
| nuf-RL | 1548 | CG33991-PL | 1..1380 | 17..1396 | 6900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-RA | 2696 | CG33991-RA | 741..2251 | 15..1525 | 7555 | 100 | Plus |
| nuf-RC | 3446 | CG33991-RC | 741..2251 | 15..1525 | 7555 | 100 | Plus |
| nuf-RL | 2735 | CG33991-RL | 741..2122 | 15..1396 | 6910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14230654..14231112 | 789..1247 | 2295 | 100 | Plus |
| 3L | 28110227 | 3L | 14200162..14200447 | 147..432 | 1430 | 100 | Plus |
| 3L | 28110227 | 3L | 14231177..14231325 | 1248..1396 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 14230175..14230310 | 655..790 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 14199966..14200100 | 15..149 | 675 | 100 | Plus |
| 3L | 28110227 | 3L | 14231924..14232055 | 1394..1525 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 14213087..14213203 | 539..655 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 14200739..14200807 | 433..501 | 345 | 100 | Plus |
| 3L | 28110227 | 3L | 14212191..14212232 | 499..540 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:48:12 has no hits.
BS29250.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:27 Download gff for
BS29250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RA | 739..2247 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:28 Download gff for
BS29250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RC | 743..2251 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:14 Download gff for
BS29250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nuf-RC | 743..2251 | 17..1525 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:14 Download gff for
BS29250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14200739..14200807 | 433..501 | 100 | -> | Plus |
| 3L | 14212194..14212232 | 502..540 | 100 | -> | Plus |
| 3L | 14213089..14213203 | 541..655 | 100 | -> | Plus |
| 3L | 14230176..14230310 | 656..790 | 100 | -> | Plus |
| 3L | 14200165..14200447 | 150..432 | 100 | -> | Plus |
| 3L | 14230656..14231112 | 791..1247 | 100 | -> | Plus |
| 3L | 14231177..14231325 | 1248..1396 | 100 | -> | Plus |
| 3L | 14231927..14232055 | 1397..1525 | 100 | | Plus |
| 3L | 14199968..14200100 | 17..149 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:28 Download gff for
BS29250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14193068..14193200 | 17..149 | 100 | -> | Plus |
| arm_3L | 14193265..14193547 | 150..432 | 100 | -> | Plus |
| arm_3L | 14193839..14193907 | 433..501 | 100 | -> | Plus |
| arm_3L | 14205294..14205332 | 502..540 | 100 | -> | Plus |
| arm_3L | 14206189..14206303 | 541..655 | 100 | -> | Plus |
| arm_3L | 14223276..14223410 | 656..790 | 100 | -> | Plus |
| arm_3L | 14223756..14224212 | 791..1247 | 100 | -> | Plus |
| arm_3L | 14224277..14224425 | 1248..1396 | 100 | -> | Plus |
| arm_3L | 14225027..14225155 | 1397..1525 | 100 | | Plus |
BS29250.pep Sequence
Translation from 16 to 1524
> BS29250.pep
MAPMPRIQLPNGNSSIKASTNDFLFAETMSGDSSPTPSSPPSSTAGVAKS
QCSSLSDGESFEGYGENEYPTQLREARSSNSNGSHNMSNHINNNSNISVG
NNSGHNHSGHSNDGNNNLNGSTGVELDLAPHVGSSTPQDDDELNIMPRDN
WARRSLRRTPTSSGRRQISSNALASQLYRSSSFNSSGRSSNCDTTEDMYS
DISLENRHDYDYRLELLQRKVDDLSDTQNIAEDRTTRTKTEYAVLQARYH
MLEEQYRESELRAEERLAEEQKRHREILARVEREASLQNENCQMKIRATE
IEATALREEAARLRVLCDKQANDLHRTEEQLELARDQIGVLQQEHEEQAQ
ALRRHEQEKKSTEELMLELGRELQRAREESGARAMPTTSPESIRLEELHQ
ELEEMRQKNRTLEEQNEELQATMLTNQATMLTNGVEQGRHLLNGTLNSLA
QELEEMSQAQLQQAFQEKEDENVRLKHYIDTILLNIVENYPQLLEVKPME
RK*
BS29250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nuf-PA | 502 | CG33991-PA | 1..502 | 1..502 | 2553 | 100 | Plus |
| nuf-PC | 502 | CG33991-PC | 1..502 | 1..502 | 2553 | 100 | Plus |
| nuf-PL | 515 | CG33991-PL | 1..515 | 1..502 | 2529 | 97.5 | Plus |
| nuf-PG | 530 | CG33991-PG | 1..530 | 1..502 | 2503 | 94.7 | Plus |
| nuf-PH | 529 | CG33991-PH | 1..529 | 1..502 | 2487 | 94.5 | Plus |
