BS29271.complete Sequence
2282 bp assembled on 2012-06-11
GenBank Submission: KX803334
> BS29271.complete
GAAGTTATCAGTCGACATGTACTCGTTTTTTGATCATTCAAAAAATCAAC
CAGATCTTACACCAATGGGGTCCTTCTGGCAGCAACATGTGGCCACTCCT
AGTAGTTCAACTCCATTCGATTCACCATTTTTTTCGGCAACACACGGCCT
TGTGCAGACTCACCCGTCTATAGGTGGAAGCCACTCTGGGCCCGCTCCAT
TAAATGGCAATAGCCTTGGGTCTGGAGCTCCATCCTCAATCCTAGCTGGT
ACTAAGCCAGCCCTAACCGCTGGAAGCGGTTACCTAAACTCACGCGGGAG
TCTACCGACCTCTGCACGTTATCCAGCTAATAAGATCACAGGAACCGTCG
TGGAACCCAACCCAAAATCTCCATTCCGCCACTTAGATTTCTCTACTAGT
GCAACTGCCGAGCTGCGGCGCAATCCTGCGCTATCTGCTCCTGATGAATG
TGCACGCGCTTGTCGCGAAGGCGAGCCTCCGAGAATTTGCTACTATCATT
TTACGTTGGAATACTACACAGTATTGGGAGCTGCGTGTCAAGTATGTACT
CCAAACGCAACGAATACGGTTTGGAGCCATTGTCAGTGTGTCTTAGCTGA
TGGAGTTGAACGTGGAATTCTAACTGCGAATCGTATGATACCCGGGCCAA
GCATTCAAGTGTGTGAAAACGACAAAGTCGTTATTGATGTGGAGAACCAT
ATGGAGGGAATGGAAGTAACTATACACTGGCACGGTATATGGCAACGTGG
ATCGCAGTATTATGATGGGGTGCCCTTCGTTACTCAGTGCCCCATTCAGC
AGGGTAATACCTTCCGTTATCAGTGGACAGGAAACGCTGGGACACATTTT
TGGCATGCTCATACCGGTCTACAGAAACTAGATGGACTCTACGGCAGCGT
CGTGGTTCGACAGCCACCATCAAGGGACCCTAACTCCCATTTATATGATT
TTGATTTAACAACACATATAATGCTTATCAGTGATTGGTTGCATGAAGAT
GCAGCAGAGAGATATCCTGGACGCTTGGCTGTTAACACAGGCCAAGATCC
GGAGTCTATGTTGATTAACGGAAAAGGCCAGTTTCGTGACCCGAACACTG
GATTTATGACTAATACTCCGTTGGAAATATTCACAATTACGCCAGGACGT
CGTTACCGCTTTCGAATGATAAATGCATTTGCTTCAGTCTGTCCAGCACA
GGTAACAATTGAGGGTCACGGCATGACGGTTATAGCAACCGATGGTGAGC
CTGTGCATCCTGTTGATGTAAATACAATCATTTCCTTTTCAGGTGAGCGC
TACGATTTTGTTATAAGCGCCGATCAACCTGTTGGAGCTTATTGGATACA
GTTACGTGGACTTGGTGAGTGTGGTATTCGTAGAGCTCAACAACTGGCTA
TCCTGCGTTACGCTCGTGGACCTTATCAGCCAGCATCTTCTCCGCCAACA
TACGATGTTGGAATACCGCAAGGAGTCGTTATGAATCCTTTGGACGCCCA
ATGTAACCGTCAACGTAACGATGCCATATGCGTAAGCCAACTTAAAAACG
CTCTTGAGATTGATCGTGGTATATTGGCAGAGAAGCCAGACGTAAAAATA
TTTTTACCTTTCCGGTTCTTTGTATACCGGGCTGAAGATCTGTTCCAGCC
AAACACTTATAACAGGTTTTTAGTGGCACCCACCGGCGACCATGTAATTT
CACTTATCGATGAAATTTCATACCTATCGGCTCCAGCGCCACTGACTTCC
CAATATAATGATATAAACCCAGATCAGTTTTGTAACGGGGACAATCGTCC
CGCAGATTGTGGGCCAAACTGTATGTGTACTCATAAAATAGATATTCCAC
TTAACGCAATCGTGGAAGTCGTTTTAGTCGATGAAGTTCAACAACCCAAT
TTGTCACATCCTTTCCATTTGCACGGTTACGGGTTCAGTGTCATTGGTAT
TGGCCGTTCTCCTGATTCTTCAGTGAAAAAGATCAATTTAAAGCACGCCT
TGGACCTAGATAGGCGGGGACTTTTACACCGTCAGTACAATTTACCGCCT
ACTAAGGATACAATTGCAGTACCAAATAACGGCTATGTGGTTCTGCGGTT
TAGGGCTGACAATCCTGGCTTCTGGCTATTCCACTGTCATTTTCTTTTCC
ACATTGTTATTGGCATGAACTTGATTTTGCAAGTCGGCACTAACGCTGAT
CTGCCACCCGTTCCGCCAGGATTCCCAACATGTGGAGACCACACACCATC
CATTCCAATAAATTAAAAGCTTTCTAGACCAT
BS29271.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laccase2-RF | 2250 | CG42345-PF | 1..2250 | 17..2266 | 11250 | 100 | Plus |
| laccase2-RA | 2355 | CG42345-PA | 131..2355 | 42..2266 | 11125 | 100 | Plus |
| laccase2-RE | 2355 | CG42345-PE | 131..2016 | 42..1927 | 8350 | 96.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:34:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laccase2-RF | 2869 | CG42345-RF | 298..2547 | 17..2266 | 11250 | 100 | Plus |
| laccase2-RA | 3561 | CG42345-RA | 339..2563 | 42..2266 | 11125 | 100 | Plus |
| laccase2-RE | 3645 | CG32838-RA | 339..2224 | 42..1927 | 8350 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5435652..5436414 | 532..1294 | 3815 | 100 | Plus |
| 2R | 25286936 | 2R | 5423750..5424239 | 42..531 | 2450 | 100 | Plus |
| 2R | 25286936 | 2R | 5446533..5446766 | 1885..2118 | 1170 | 100 | Plus |
| 2R | 25286936 | 2R | 5440852..5441070 | 1668..1886 | 1080 | 99.5 | Plus |
| 2R | 25286936 | 2R | 5440610..5440805 | 1478..1673 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 5439568..5439756 | 1291..1479 | 945 | 100 | Plus |
| 2R | 25286936 | 2R | 5446827..5446976 | 2117..2266 | 750 | 100 | Plus |
| 2R | 25286936 | 2R | 5454528..5454674 | 1781..1927 | 240 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:34:26 has no hits.
BS29271.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:59 Download gff for
BS29271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42345-RF | 42..2289 | 17..2264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:15 Download gff for
BS29271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laccase2-RF | 298..2545 | 17..2264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:58 Download gff for
BS29271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laccase2-RF | 298..2545 | 17..2264 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:58 Download gff for
BS29271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5416393..5416417 | 17..41 | 100 | -> | Plus |
| 2R | 5423750..5424239 | 42..531 | 100 | -> | Plus |
| 2R | 5435652..5436412 | 532..1292 | 100 | -> | Plus |
| 2R | 5439570..5439754 | 1293..1477 | 100 | -> | Plus |
| 2R | 5440610..5440805 | 1478..1673 | 100 | -> | Plus |
| 2R | 5440858..5441070 | 1674..1886 | 100 | -> | Plus |
| 2R | 5446535..5446765 | 1887..2117 | 100 | -> | Plus |
| 2R | 5446828..5446974 | 2118..2264 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:15 Download gff for
BS29271.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1303898..1303922 | 17..41 | 100 | -> | Plus |
| arm_2R | 1311255..1311744 | 42..531 | 100 | -> | Plus |
| arm_2R | 1323157..1323917 | 532..1292 | 100 | -> | Plus |
| arm_2R | 1327075..1327259 | 1293..1477 | 100 | -> | Plus |
| arm_2R | 1328115..1328310 | 1478..1673 | 100 | -> | Plus |
| arm_2R | 1328363..1328575 | 1674..1886 | 100 | -> | Plus |
| arm_2R | 1334040..1334270 | 1887..2117 | 100 | -> | Plus |
| arm_2R | 1334333..1334479 | 2118..2264 | 100 | | Plus |
BS29271.pep Sequence
Translation from 16 to 2265
> BS29271.pep
MYSFFDHSKNQPDLTPMGSFWQQHVATPSSSTPFDSPFFSATHGLVQTHP
SIGGSHSGPAPLNGNSLGSGAPSSILAGTKPALTAGSGYLNSRGSLPTSA
RYPANKITGTVVEPNPKSPFRHLDFSTSATAELRRNPALSAPDECARACR
EGEPPRICYYHFTLEYYTVLGAACQVCTPNATNTVWSHCQCVLADGVERG
ILTANRMIPGPSIQVCENDKVVIDVENHMEGMEVTIHWHGIWQRGSQYYD
GVPFVTQCPIQQGNTFRYQWTGNAGTHFWHAHTGLQKLDGLYGSVVVRQP
PSRDPNSHLYDFDLTTHIMLISDWLHEDAAERYPGRLAVNTGQDPESMLI
NGKGQFRDPNTGFMTNTPLEIFTITPGRRYRFRMINAFASVCPAQVTIEG
HGMTVIATDGEPVHPVDVNTIISFSGERYDFVISADQPVGAYWIQLRGLG
ECGIRRAQQLAILRYARGPYQPASSPPTYDVGIPQGVVMNPLDAQCNRQR
NDAICVSQLKNALEIDRGILAEKPDVKIFLPFRFFVYRAEDLFQPNTYNR
FLVAPTGDHVISLIDEISYLSAPAPLTSQYNDINPDQFCNGDNRPADCGP
NCMCTHKIDIPLNAIVEVVLVDEVQQPNLSHPFHLHGYGFSVIGIGRSPD
SSVKKINLKHALDLDRRGLLHRQYNLPPTKDTIAVPNNGYVVLRFRADNP
GFWLFHCHFLFHIVIGMNLILQVGTNADLPPVPPGFPTCGDHTPSIPIN*
BS29271.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:03:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laccase2-PF | 749 | CG42345-PF | 1..749 | 1..749 | 4081 | 100 | Plus |
| laccase2-PA | 784 | CG30437-PA | 44..784 | 9..749 | 4031 | 99.9 | Plus |
| laccase2-PE | 784 | CG32838-PA | 44..781 | 9..746 | 3761 | 92.5 | Plus |
| laccase2-PD | 784 | CG42345-PD | 44..781 | 9..746 | 3701 | 90.7 | Plus |
| laccase2-PG | 784 | CG42345-PG | 44..781 | 9..746 | 3674 | 89.8 | Plus |
