BS29273.complete Sequence
1457 bp assembled on 2012-04-25
GenBank Submission: KX803065
> BS29273.complete
GAAGTTATCAGTCGACATGGCCGAAGAGTATATCCCAGATGCCAGCGTCA
TGGACACGATTGTCCCCGCCATCCTGGGACTGACTGCGGCTGCTGTCCTC
TCGTCAGTGGCCTGCATCTGCGCCCGGCAGATGCGCCTCCGGAACAAGAA
ACAGAGCCAGCACGACGCCTCGTTCCCCTTCCAGCCGACCCGGCGACCGA
CCGCCGTTCGATCGCCCAGCGGCCAGCCGCCGCACTACTTGAAGAAGTCG
CCCTCGCCGACGGGAGGCAAGCAGATGGGACTGCTGTCGCCGATGCAGGA
CCAGTCCACCTCCCCGATTGCGCAACCGAATGTCAAGTACAGCGAGGAGG
GAGATGGACCCGCCCAGCATGCGGAGCAGCAGAATGGCAATCAACTGACC
GTGGTGGATGGTAATGGGTTGAAGCACTCGCTGCACAACAGCCTTCACCA
CTCGCCGGTAGAGACGATCGCCAACGGAAGTGTGACCATTACCCTGGACG
ACCATTCGCTGACCAACGGGAAGGAGCTGACCGTGACCGACCAGTACGGC
AAGCTGGGTACCATCTATTTTAAGCTGCGCTACTTGGCCGAAAGGAACGC
CCTTATGGTGTCCATCATCCGTTGTCGCGGACTCCCCTGCAAGGGAGGAT
CGAGCGGAACCGGAGATATTCCCACTGGCATGAATGGACGCACTCAGGCG
GCAACGGATCCGTATGTCAAGCTGCAGCTGCTGCCGGACAAGCAGCACAA
GGTCAAGACCCGGGTGGTGCGAAATACCCGGAACCCGGTTTACGACGAGG
ACTTCACCTTCTACGGCCTGAACATGAACGACCTGCAGAACATGTCGCTG
CACTTTGTCATCCTCAGCTTCGATCGATACTCACGTGACGACGTCATTGG
CGAAGTGGTGTGCCCATTGACCTCCATCGAGATCGGGGACATCTCCAAAG
AGGCTTTGTCCATCAGCAAAGAGATCCAGCCACGGAGCTTGAAGATTCGA
GCCCAGGGTCGCGGGGAGCTGCTCATCTCCCTCTGCTGGCAACCAGCTGC
CGGTCGCCTCACCGTCGTCTTGCTGAAGGCCCGAAACTTACCGCGCATGG
ATGTCACCGGACTGGCCGATCCGTATGTTAAGATATATCTCCTCTACAAT
GGCCAACGCATCGCCAAGAAGAAGACGCACGTGAAGAAACGAACTCTGAG
CCCCGTTTTCAACGAGAGCTTCGCATTCGATATTCCCGCCGCCGAAGGCG
CTGGCGCCAGTCTTGAGGGTGTGTCTTTGGAACTGATGCTGCTCGACTGG
GATCGCGTGACCAAGAATGAGGTCATCGGTCGGCTGGAGCTGGGCGGCCC
GAACTCGAGCAGCACCGCCTTGAACCACTGGAACGAGGTTTGCAACTCGC
CGCGCCGCCAGATCGCCGAGTGGCACAAGCTGAACGAGTAGAAGCTTTCT
AGACCAT
BS29273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt4-RA | 1425 | CG10047-PA | 1..1425 | 17..1441 | 7125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt4-RA | 3103 | CG10047-RA | 182..1606 | 17..1441 | 7125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7267669..7268856 | 60..1247 | 5940 | 100 | Plus |
| 3R | 32079331 | 3R | 7269191..7269312 | 1320..1441 | 610 | 100 | Plus |
| 3R | 32079331 | 3R | 7269055..7269131 | 1247..1323 | 385 | 100 | Plus |
| 3R | 32079331 | 3R | 7266853..7266895 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:48:21 has no hits.
BS29273.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:28 Download gff for
BS29273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt4-RA | 186..1610 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:30 Download gff for
BS29273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt4-RA | 182..1606 | 17..1441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:18 Download gff for
BS29273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt4-RA | 182..1606 | 17..1441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:18 Download gff for
BS29273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7266853..7266895 | 17..59 | 100 | -> | Plus |
| 3R | 7267669..7268855 | 60..1246 | 100 | -> | Plus |
| 3R | 7269055..7269129 | 1247..1321 | 100 | -> | Plus |
| 3R | 7269193..7269312 | 1322..1441 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:30 Download gff for
BS29273.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3092575..3092617 | 17..59 | 100 | -> | Plus |
| arm_3R | 3093391..3094577 | 60..1246 | 100 | -> | Plus |
| arm_3R | 3094777..3094851 | 1247..1321 | 100 | -> | Plus |
| arm_3R | 3094915..3095034 | 1322..1441 | 100 | | Plus |
BS29273.pep Sequence
Translation from 16 to 1440
> BS29273.pep
MAEEYIPDASVMDTIVPAILGLTAAAVLSSVACICARQMRLRNKKQSQHD
ASFPFQPTRRPTAVRSPSGQPPHYLKKSPSPTGGKQMGLLSPMQDQSTSP
IAQPNVKYSEEGDGPAQHAEQQNGNQLTVVDGNGLKHSLHNSLHHSPVET
IANGSVTITLDDHSLTNGKELTVTDQYGKLGTIYFKLRYLAERNALMVSI
IRCRGLPCKGGSSGTGDIPTGMNGRTQAATDPYVKLQLLPDKQHKVKTRV
VRNTRNPVYDEDFTFYGLNMNDLQNMSLHFVILSFDRYSRDDVIGEVVCP
LTSIEIGDISKEALSISKEIQPRSLKIRAQGRGELLISLCWQPAAGRLTV
VLLKARNLPRMDVTGLADPYVKIYLLYNGQRIAKKKTHVKKRTLSPVFNE
SFAFDIPAAEGAGASLEGVSLELMLLDWDRVTKNEVIGRLELGGPNSSST
ALNHWNEVCNSPRRQIAEWHKLNE*
BS29273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt4-PA | 474 | CG10047-PA | 1..474 | 1..474 | 2463 | 100 | Plus |
| Syt1-PH | 473 | CG3139-PH | 192..461 | 179..474 | 551 | 41.5 | Plus |
| Syt1-PI | 472 | CG3139-PI | 190..460 | 179..474 | 550 | 41.8 | Plus |
| Syt1-PE | 472 | CG3139-PE | 192..460 | 179..474 | 550 | 41 | Plus |
| Syt1-PC | 472 | CG3139-PC | 190..460 | 179..474 | 550 | 41.8 | Plus |
| Syt1-PH | 473 | CG3139-PH | 173..297 | 312..442 | 169 | 34.1 | Plus |
| Syt1-PI | 472 | CG3139-PI | 171..295 | 312..442 | 169 | 34.1 | Plus |
| Syt1-PE | 472 | CG3139-PE | 173..297 | 312..442 | 169 | 34.1 | Plus |
