BS29275.complete Sequence
1565 bp assembled on 2012-04-25
GenBank Submission: KX801236
> BS29275.complete
GAAGTTATCAGTCGACATGGATGCCAAGGAGTTTCGGGAATTCGGCAAGG
CCGCCATTGACTACATAGCCGACTATCTGGAGAATATTCGGGATGACGAC
GTACTGCCCAATGTGGAGCCAGGCTATCTGTTGGACCTGCTGCCCACAGA
GATGCCGGAAGAGCCCGAAGCGTGGAAGGATGTCCTCGGCGACATTAGTC
GCGTCATCAAGCCGGGACTGACCCACTGGCAGTCGCCTCACATGCATGCC
TACTACCCCACCAGCACCTCGTATCCCTCCATTGTGGGCGAGATGCTGGC
CAGCGGGTTCGGCGTCATCGGATTCAGCTGGATCTGCAGTCCCGCCTGCA
CAGAACTGGAGGTGGTGGTCATGGACTGGCTGGCCAAGTTCCTGAAGCTG
CCCGCACACTTCCAGCACGCCAGCGATGGACCAGGAGGCGGGGTGATCCA
GGGATCAGCTAGCGAGGCTGTGTTGGTGGCTGTCCTAGCTGCCAGGGAAC
AAGCTGTGGCCAACTACAGGGAATCGCATCCGGAGCTGAGCGAAAGTGAG
GTGCGTGGCCGCTTGGTGGCCTACTCCTCGGACCAGAGTAACAGCTGCAT
TGAGAAGGCTGGAGTCCTGGCTGCCATGCCGATTCGATTGCTGCCGGCTG
GAGAGGATTTCGTACTTAGAGGCGATACACTGAGAGGAGCCATCGAGGAG
GACGTGGCAGCGGGCAGGATTCCGGTGATCTGCGTTGCCACTCTGGGCAC
CACGGGCACTTGTGCCTATGACGACATTGAATCCCTGTCCGCTGTCTGCG
AGGAATTCAAGGTGTGGCTCCATGTTGATGCCGCGTATGCCGGTGGAGCC
TTTGCTCTGGAGGAATGTTCGGATTTGCGAAAGGGATTGGATCGCGTGGA
CTCGCTAAACTTCAACCTGCACAAGTTCATGCTGGTCAACTTCGATTGCT
CGGCCATGTGGCTAAGGGATGCCAACAAGGTGGTCGACAGCTTCAATGTG
GATCGCATCTACCTGAAGCACAAGCACGAGGGTCAGTCGCAAATTCCTGA
CTTCCGTCATTGGCAAATCCCCCTGGGTCGCCGCTTCCGAGCTCTAAAAG
TCTGGATCACATTCCGCACTCTGGGAGCCGAGGGATTGCGAAACCATGTG
CGCAAGCACATCGAGTTGGCCAAACAGTTTGAGCAGCTTGTGCTCAAGGA
TTCGCGATTCGAGCTGGTGGCTCCTCGTGCCCTGGGACTGGTTTGTTTCC
GGCCCAAAGGTGACAATGAGATTACCACCCAGTTGCTGCAACGGCTTATG
GATCGAAAGAAGATCTACATGGTTAAGGCCGAGCATGCGGGTCGTCAGTT
TCTGCGATTCGTCGTATGCGGCATGGACACCAAAGCCTCCGATATTGATT
TCGCCTGGCAGGAGATCGAGTCTCAACTGACGGACCTGCAGGCGGAGCAA
TCCTTGGTGGCCCGCAAATCGGGAAACGTCGGCGATCTTGCGCAGCACTT
CCAGATCCATCTGAGCACCGAAAATGCAACGCACGAGAAATCTCAGTGAA
AGCTTTCTAGACCAT
BS29275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RA | 1533 | CG10501-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| amd-RB | 1533 | CG10501-PB | 293..1533 | 309..1549 | 6145 | 99.7 | Plus |
| Ddc-RD | 1428 | CG10697-PD | 187..397 | 203..413 | 230 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-RA | 1792 | CG10501-RA | 161..1693 | 17..1549 | 7665 | 100 | Plus |
| amd-RB | 1749 | CG10501-RB | 410..1650 | 309..1549 | 6145 | 99.7 | Plus |
| Ddc-RD | 2797 | CG10697-RD | 1258..1468 | 203..413 | 230 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19112793..19114011 | 331..1549 | 6095 | 100 | Plus |
| 2L | 23513712 | 2L | 19112001..19112315 | 17..331 | 1575 | 100 | Plus |
| 2L | 23513712 | 2L | 19117812..19118022 | 413..203 | 230 | 73.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:48:45 has no hits.
BS29275.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:29 Download gff for
BS29275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 158..1689 | 17..1548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:32 Download gff for
BS29275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 161..1692 | 17..1548 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:26 Download gff for
BS29275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| amd-RA | 161..1692 | 17..1548 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:26 Download gff for
BS29275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19112001..19112315 | 17..331 | 100 | -> | Plus |
| 2L | 19112794..19114010 | 332..1548 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:32 Download gff for
BS29275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19112001..19112315 | 17..331 | 100 | -> | Plus |
| arm_2L | 19112794..19114010 | 332..1548 | 100 | | Plus |
BS29275.pep Sequence
Translation from 16 to 1548
> BS29275.pep
MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEP
EAWKDVLGDISRVIKPGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGV
IGFSWICSPACTELEVVVMDWLAKFLKLPAHFQHASDGPGGGVIQGSASE
AVLVAVLAAREQAVANYRESHPELSESEVRGRLVAYSSDQSNSCIEKAGV
LAAMPIRLLPAGEDFVLRGDTLRGAIEEDVAAGRIPVICVATLGTTGTCA
YDDIESLSAVCEEFKVWLHVDAAYAGGAFALEECSDLRKGLDRVDSLNFN
LHKFMLVNFDCSAMWLRDANKVVDSFNVDRIYLKHKHEGQSQIPDFRHWQ
IPLGRRFRALKVWITFRTLGAEGLRNHVRKHIELAKQFEQLVLKDSRFEL
VAPRALGLVCFRPKGDNEITTQLLQRLMDRKKIYMVKAEHAGRQFLRFVV
CGMDTKASDIDFAWQEIESQLTDLQAEQSLVARKSGNVGDLAQHFQIHLS
TENATHEKSQ*
BS29275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| amd-PA | 510 | CG10501-PA | 1..510 | 1..510 | 2666 | 100 | Plus |
| amd-PB | 510 | CG10501-PB | 1..510 | 1..510 | 2429 | 90.4 | Plus |
| Ddc-PD | 475 | CG10697-PD | 1..475 | 1..478 | 1334 | 52.1 | Plus |
| Ddc-PB | 475 | CG10697-PB | 1..475 | 1..478 | 1334 | 52.1 | Plus |
| Ddc-PC | 510 | CG10697-PC | 36..510 | 1..478 | 1334 | 52.1 | Plus |
