BS29279.complete Sequence
1553 bp assembled on 2012-04-25
GenBank Submission: KX803316
> BS29279.complete
GAAGTTATCAGTCGACATGGAAATGGAAGACAATTGGTGGGTCACCAAGT
TAAAGGCTCTGGAGTCGAAGCCACAAAGGCTGGATGCGCTGACCGCCATG
AACTCAGCCATCGCAAAGGAGGCGGCTCTTCCGCGTCAAATAATTGAACG
CCTGCTGACCACGGACCAATTGTATGACTGCGCCAATCCCGCCGCGGATT
CCCATGTTCCCAAGGATCAGGCCGTGGACGTGACCCTGGAATTGCTGTGC
CACTGCCTTGATCAGCTGGCGATGGACACCGCCGACGAGCAGCTGTCCAG
TCTGCTAAGACGTGGCTTGACCCACTCGAATCCAGCCTTGCGTGCCCAGG
TGTTGGCCAGTTTGTTCAAGAAGCTGCTTCGCCAGTTGACCGTCGGTCAG
GTTCTCACCCTGCCCAACAATGAGCTTATTTTCCTCATCTTGGACGAGCT
GAAACAACCGGATACGCAGAGTACCTCTCTGGCCATCAATATCCTATCCA
TCGTGCTGCCTCAGCGAATCAGCAATGCCGATGTGCAGGCAAAGCTAGTA
CAGCTCCTAAAGCAAAATGAGATCGTGCGCTGTCGCGCCTACGAATTGGC
AGTGGTCCTGGCCAAGAAAAGTGCCACCTTACTCAGTGACGTTACATTTA
TTCTGGATGCGGCTCTCAGCGAACTGGATAACGACGATGTTTTATTGCAG
GCTAGCGTAATGGAGCTCCTAGTGCCACTGGCCGAACAAAACCATGGTCT
GTCCTACATGGAACGTCGTCGCGTTTTGGATATAATCAGCTATCGGGTCC
AACGCGTCGAAGAGCATCCGCTAGACGCCCTGCTCGTTCCCAGCATTATG
AAGTTTTTCGGCAAAATTTCCGTATACCAGCCTCTGAAAATCATTGGCGG
CTACCCGCACATGCTGGCCTGCTTGTTCATGCAGCTTCAATCGGAGGATG
AGAGTATTCTGCCCACTGCCATGGATACGCTTGCCAATTTGGCCACTACT
CCACAGGGCAAGATACTGCTGAACATGCACTTTAGCGGGGCCATGGAGAA
GTCCTTTAAGAAGTATGGCTCGCATACTAAGAAGCTATCGGCGCACATCA
AGAAGAGGCTGCTCAACTCCCTGGATGTGATTTATGACTTCAAGACGCCG
CCTGCCACAGAAATCATTAACATTGGTAAAAACTGGTACGAGTGCTTCGC
TGGGGGAGCGCATGCTAATATCATTATGGACCTGATAAACACTCCGTTCC
CCGATCTTCAAATGGCCGCCTTGTCGTTCTTGAAAACCATTTGTAAGTAC
AACTGGGGCATTGTAGCTCTAAAGAATACCGGCGGTGCTGTGGAGTTCCT
TCTTTCGCGTCAAAAGGATCTGCACAGGGACATTAAGTATATGAAGTGGC
AAATTATGGAGATTCTGTCCGCTAGCGCTGAGTTTTCGCCCACCGAAACC
ATCCGTTTCACGGCCTATGTGAACGAGGGACCCTATCACGTCCAGGCGGA
TCTCGATGTAGCCACTGAACCTCAGGGCAACGCATAGAAGCTTTCTAGAC
CAT
BS29279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12096-RC | 1521 | CG12096-PC | 1..1521 | 17..1537 | 7605 | 100 | Plus |
| CG12096-RB | 1521 | CG12096-PB | 1..1521 | 17..1537 | 7605 | 100 | Plus |
| CG12096-RA | 1521 | CG12096-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12096-RC | 2985 | CG12096-RC | 70..1592 | 17..1539 | 7615 | 100 | Plus |
| CG12096-RB | 1830 | CG12096-RB | 70..1592 | 17..1539 | 7615 | 100 | Plus |
| CG12096-RA | 2040 | CG12096-RA | 280..1802 | 17..1539 | 7615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13159883..13161033 | 17..1167 | 5755 | 100 | Plus |
| X | 23542271 | X | 13161086..13161461 | 1164..1539 | 1865 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:38:38 has no hits.
BS29279.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:23 Download gff for
BS29279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12096-RA | 178..1698 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:13 Download gff for
BS29279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12096-RA | 280..1800 | 17..1537 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:00:51 Download gff for
BS29279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12096-RA | 280..1800 | 17..1537 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:00:51 Download gff for
BS29279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13159883..13161033 | 17..1167 | 100 | -> | Plus |
| X | 13161090..13161459 | 1168..1537 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:13 Download gff for
BS29279.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13053916..13055066 | 17..1167 | 100 | -> | Plus |
| arm_X | 13055123..13055492 | 1168..1537 | 100 | | Plus |
BS29279.pep Sequence
Translation from 16 to 1536
> BS29279.pep
MEMEDNWWVTKLKALESKPQRLDALTAMNSAIAKEAALPRQIIERLLTTD
QLYDCANPAADSHVPKDQAVDVTLELLCHCLDQLAMDTADEQLSSLLRRG
LTHSNPALRAQVLASLFKKLLRQLTVGQVLTLPNNELIFLILDELKQPDT
QSTSLAINILSIVLPQRISNADVQAKLVQLLKQNEIVRCRAYELAVVLAK
KSATLLSDVTFILDAALSELDNDDVLLQASVMELLVPLAEQNHGLSYMER
RRVLDIISYRVQRVEEHPLDALLVPSIMKFFGKISVYQPLKIIGGYPHML
ACLFMQLQSEDESILPTAMDTLANLATTPQGKILLNMHFSGAMEKSFKKY
GSHTKKLSAHIKKRLLNSLDVIYDFKTPPATEIINIGKNWYECFAGGAHA
NIIMDLINTPFPDLQMAALSFLKTICKYNWGIVALKNTGGAVEFLLSRQK
DLHRDIKYMKWQIMEILSASAEFSPTETIRFTAYVNEGPYHVQADLDVAT
EPQGNA*
BS29279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12096-PC | 506 | CG12096-PC | 1..506 | 1..506 | 2563 | 100 | Plus |
| CG12096-PB | 506 | CG12096-PB | 1..506 | 1..506 | 2563 | 100 | Plus |
| CG12096-PA | 506 | CG12096-PA | 1..506 | 1..506 | 2563 | 100 | Plus |
