BS29288.complete Sequence
1136 bp assembled on 2012-04-25
GenBank Submission: KX803261
> BS29288.complete
GAAGTTATCAGTCGACATGGAGACTTCTGCCACCACAAAGACAACCACGC
TCACCACCCCCGCCAAACTGTATGGCAAGGATCTGAGTGAGTACGATGAT
GTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCCCCGAGGAGATAACCAT
ACTGGCCAAAGAAGTGGATCCCGATGACAACTTCCTGCCGCCAGACCAGC
GCAATAGCTATGAGTGCACCAAGGAAGCCACCGGGCCTCTCAATCGCAAG
CAGCTGATCGAGCACATCAATAAGCAGGCCATCGAGACCCCGGATCAGCC
GGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGTGGAAAGAAGTGGGTCC
CACCGCCAAGGGATGCCCGCGACATCGAGGCCGAAGAACAAATCGCCATT
GACATGGGCGAGGAGTACGAACACGCCCTTAACGATGCCACGCAGGAGGA
GATCATCGATCTGGCCGCCATCCTCGGCTTCCACTCGATGATGAATCAGG
ACCAGTACCACGCCTCCTTGCTCAACAAGGGTCAGCCCGTGGGCCTGGGA
TGGGATGGCATTACGAAATCCACTCAGCAGAAGCTCTTCCCTATGGATCC
GCCCAACAACACAGATGTGGAGGAATCCATCAAGCGGGTCAAGGACGATG
ACTCCAAGCTGATTGACCTCAACTTGAACAACATTAAGAACATCTCGGAC
GAGAAACTCGAGCAACTGTTTGCCGCACTGCCTCAGAACGAACATTTGGA
AGTCCTCTCGCTAACAAATGTGGGCCTCACCGACAAGACAGCCCTCCTGT
TAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAGAGTATTAAATGTCGAG
ACCAACTTTATCAGTCCGCCCGTGATTGTTAAGTTGGTGCAAGCCCTGCT
CAAGTGCCACACCATCGAGGAGTTTAGGGCCTCCAATCAGCGGTCTGCGG
TTCTGGGCAACAAGATCGAGATGGAAATCACCGACCTGGTGGAGAAGAAC
TCGTCGCTGCTGCGCCTTGGCTTGCACCTGGAGTTCAACGACGCCCGCCA
CCGAGTGGCCGCTCACCTGCAGCGCAACATCGACAGAATACGTGTGAAAC
GCCTGAACCAGCGTAAATAAAAGCTTTCTAGACCAT
BS29288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RA | 1104 | CG1539-PA | 1..1104 | 17..1120 | 5520 | 100 | Plus |
| tmod-RI | 1320 | CG1539-PI | 220..1320 | 20..1120 | 5505 | 100 | Plus |
| tmod-RL | 1320 | CG1539-PL | 220..1320 | 20..1120 | 5505 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RA | 2537 | CG1539-RA | 295..1402 | 15..1122 | 5540 | 100 | Plus |
| tmod-RI | 3000 | CG1539-RI | 763..1865 | 20..1122 | 5515 | 100 | Plus |
| tmod-RL | 2662 | CG1539-RL | 425..1527 | 20..1122 | 5515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:40:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 176..688 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 30572597..30572850 | 687..940 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 30571807..30571962 | 21..176 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 30572922..30573072 | 938..1088 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:40:08 has no hits.
BS29288.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 14:07:24 Download gff for
BS29288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 305..1406 | 17..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:17 Download gff for
BS29288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 297..1398 | 17..1118 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:01:22 Download gff for
BS29288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RA | 297..1398 | 17..1118 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:01:22 Download gff for
BS29288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30571803..30571961 | 17..175 | 98 | -> | Plus |
| 3R | 30572023..30572535 | 176..688 | 100 | -> | Plus |
| 3R | 30572599..30572850 | 689..940 | 100 | -> | Plus |
| 3R | 30572925..30573072 | 941..1088 | 100 | -> | Plus |
| 3R | 30577179..30577208 | 1089..1118 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:17 Download gff for
BS29288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26397525..26397683 | 17..175 | 98 | -> | Plus |
| arm_3R | 26397745..26398257 | 176..688 | 100 | -> | Plus |
| arm_3R | 26398321..26398572 | 689..940 | 100 | -> | Plus |
| arm_3R | 26398647..26398794 | 941..1088 | 100 | -> | Plus |
| arm_3R | 26402901..26402930 | 1089..1118 | 100 | | Plus |
BS29288.pep Sequence
Translation from 16 to 1119
> BS29288.pep
METSATTKTTTLTTPAKLYGKDLSEYDDVDVESLLAQLSPEEITILAKEV
DPDDNFLPPDQRNSYECTKEATGPLNRKQLIEHINKQAIETPDQPEFEPF
VQGKVRGKKWVPPPRDARDIEAEEQIAIDMGEEYEHALNDATQEEIIDLA
AILGFHSMMNQDQYHASLLNKGQPVGLGWDGITKSTQQKLFPMDPPNNTD
VEESIKRVKDDDSKLIDLNLNNIKNISDEKLEQLFAALPQNEHLEVLSLT
NVGLTDKTALLLAAAIEKSKTLRVLNVETNFISPPVIVKLVQALLKCHTI
EEFRASNQRSAVLGNKIEMEITDLVEKNSSLLRLGLHLEFNDARHRVAAH
LQRNIDRIRVKRLNQRK*
BS29288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-PA | 367 | CG1539-PA | 1..367 | 1..367 | 1870 | 100 | Plus |
| tmod-PI | 439 | CG1539-PI | 74..439 | 2..367 | 1865 | 100 | Plus |
| tmod-PL | 439 | CG1539-PL | 74..439 | 2..367 | 1865 | 100 | Plus |
| tmod-PE | 439 | CG1539-PE | 74..439 | 2..367 | 1865 | 100 | Plus |
| tmod-PH | 372 | CG1539-PH | 8..372 | 3..367 | 1860 | 100 | Plus |
