BS29315.complete Sequence
1460 bp assembled on 2012-07-26
GenBank Submission: KX803959
> BS29315.complete
GAAGTTATCAGTCGACATGCTGCAGAATCCTTCCAAATATCACGCAAATC
CCTTGTCGCACTTCCTGGCATTGCATAACACACAAGCCAGTGGCGGCGGC
AGCGGCGGGGGATCGTCGGTCGCCGGACTTGGAGGTTTGGGTGGGGGCAT
TCATGCACATGGTCAACCGCATCATGCAGCGCTGGCAGCGGCTGCAGCAG
CGGCGGTCGCTGTCTCGGCGGGTCAGAGTTCATACCAAATGGAGCACCAG
CAGCAGCATCATCAGTTGCAGCAGCAGCAGCAGCAGCAGCAACATCATCA
TCATCAGCAGCTGCACACCCACCACCAGGATGGCCACCACCCACACCCAC
CGACACCCACCACCGGCAACAACAACAACAACAGCAGTAGCAGCAGCAAC
AGCAGCAGCCACAACAGCAACAGCAACCACCGGGAACAGTTGGCGGCGGC
GGCAGCCACTGCGACGTCGCACGCGCAGCTCATCGAGGCGGCAGCGGCGC
ATTCCTCCCTCGACGTGGGCAAGTCCTTTACCATCGCCGCCATTTTGGGC
CTGCAGAGCCAGCGCAAGGACTACAACAATGCCATCAATCTCTCCCTGCA
CGACAACAACAACATCATCGGTGACGACAACAACAAGTGCTACACGAGCA
ACCCCAACAACAACAACAACAACAACAATAACGGCGGCAGCAACAGTGGC
AACAACAACAGCAGCCCGAGTGTAAACAACTTCAATTGTGATAGTGTCGC
CGGTAATGGACGTTACCTGCACGGCGGACACCAGCATCCGCATCCGCACC
AGGCGGGATTTGCAGCGGTTGCCGCCGCCGTCGGAGCAGCTCCCTCCGCC
CTGCAGAGCCTGCAGCAGCTCCACCAGCAACACCACGCTCAGCAGCAGGC
CACCCTGAGCTTTCAGCGGGAAAAACTCAAGTCGGATTCTCACAAGAAGA
GCGCACTGAAGAACAAGCGCGTCCGGACAATCTTCACGCCGGAGCAGTTG
GAGTGCCTGGAGGCGGAGTTCGAGCGCCAGCAGTACATGGTCGGCCCGGA
GCGGCTCTACTTGGCACACACCCTAAAGTTAACGGAGGCTCAGGTGAAGG
TGTGGTTCCAGAATAGGCGGATCAAGTGGCGCAAGCACCACTTGGAACTG
ACACAACAACGGCTGGCATTGATAAGGCAAACTCAACTGCCAGGTACATC
GTTATTGGGCAATCAAGTATCCGTGTCGGCCAATGCGGCCCATTCTGTGT
CCACGGAACGCACAAACGGATGCAGTGCAGCCTCGCCCAGCCTGCAGGAG
GAGGACAACGAGGATAGCAAGCACTCGCTGTCGCTTTCGGGCGCATTACC
GCCGTTGAGTCGAGCGCAGTCCGAGTCGGATTTGTCCATCTGTAACGATT
CCCTGGACGGCGACAGCCTCATGGACGGCAGCGAGGAGGCCTAAAAGCTT
TCTAGACCAT
BS29315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18599-RA | 1428 | CG18599-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18599-RA | 1847 | CG18599-RA | 348..1778 | 16..1446 | 7155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18269556..18270475 | 16..935 | 4600 | 100 | Plus |
| 3R | 32079331 | 3R | 18270592..18271103 | 935..1446 | 2560 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6877 | 779..898 | 140 | 59.5 | Plus |
BS29315.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-07-26 14:34:10 Download gff for
BS29315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18599-RA | 350..1775 | 17..1442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:44 Download gff for
BS29315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18599-RA | 350..1775 | 17..1442 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:50:42 Download gff for
BS29315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18599-RA | 349..1774 | 17..1442 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:50:42 Download gff for
BS29315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18269557..18270475 | 17..935 | 100 | -> | Plus |
| 3R | 18270593..18271099 | 936..1442 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:44 Download gff for
BS29315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14095279..14096197 | 17..935 | 100 | -> | Plus |
| arm_3R | 14096315..14096821 | 936..1442 | 100 | | Plus |
BS29315.pep Sequence
Translation from 16 to 1443
> BS29315.pep
MLQNPSKYHANPLSHFLALHNTQASGGGSGGGSSVAGLGGLGGGIHAHGQ
PHHAALAAAAAAAVAVSAGQSSYQMEHQQQHHQLQQQQQQQQHHHHQQLH
THHQDGHHPHPPTPTTGNNNNNSSSSSNSSSHNSNSNHREQLAAAAATAT
SHAQLIEAAAAHSSLDVGKSFTIAAILGLQSQRKDYNNAINLSLHDNNNI
IGDDNNKCYTSNPNNNNNNNNNGGSNSGNNNSSPSVNNFNCDSVAGNGRY
LHGGHQHPHPHQAGFAAVAAAVGAAPSALQSLQQLHQQHHAQQQATLSFQ
REKLKSDSHKKSALKNKRVRTIFTPEQLECLEAEFERQQYMVGPERLYLA
HTLKLTEAQVKVWFQNRRIKWRKHHLELTQQRLALIRQTQLPGTSLLGNQ
VSVSANAAHSVSTERTNGCSAASPSLQEEDNEDSKHSLSLSGALPPLSRA
QSESDLSICNDSLDGDSLMDGSEEA*
BS29315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18599-PA | 475 | CG18599-PA | 1..475 | 1..475 | 2495 | 100 | Plus |
| HGTX-PA | 513 | CG13475-PA | 116..451 | 45..375 | 215 | 24.7 | Plus |
| C15-PA | 339 | CG7937-PA | 5..278 | 90..377 | 209 | 24.2 | Plus |
| toe-PA | 640 | CG10704-PA | 302..457 | 202..395 | 201 | 34 | Plus |
| Dbx-PC | 741 | CG42234-PC | 185..490 | 70..372 | 199 | 23.9 | Plus |
