BS29318.complete Sequence
1967 bp assembled on 2012-05-15
GenBank Submission: KX806162
> BS29318.complete
GAAGTTATCAGTCGACATGATCGATGCGGCCTGCAATTACTTAAATCCCT
ATGCGCAACAGCATCAGGCGCAGCAGCAGCAACATGCGCAACATCAGCAA
CACGCGCAACAACAGCAACATCATCTGCACATGCAGCAGGCGCAACATCA
TCTGCACTTGTCGCATCAGCAGGCGCAACAGCAGCATATGCAACACTTGA
CACAGCAACAGCAGCAGCAGCAACAACAACAGCAGCAACAGCAGCAGCAA
CAGCAGCAACAACAACAGCCGCAACAGCAGCAACATGACTTCCTCAGCGC
CGCCGCCCTGCTGTCCGCCCCACCATCCCTATCCGGCTCGAGTTCCGGCT
CCAGCTCCGGCAGTTCTCCGCTATATGGAAAGCCGCCAATGAAGCTGGAA
CTGCCGTATCCACAGGCCTCATCCACGGGCACCGCATCGCCCAACTCCAG
CATACAATCGGCGCCATCATCGGCCTCCGTGTCGCCCAGCATCTTCCCAT
CACCTGCCCAGTCATTCGCCTCCATTTCGGCCAGTCCATCTACGCCCACC
ACGACCTTGGCGCCACCTACAACGGCGGCAGCGGGCGCCCTTGCGGGATC
ACCCACATCCTCCTCACCATCCTCGTCAGCAGCATCGGCTGCAGCGGCGG
CAGCAGCAGCTGCGGCGGCAGCAGCGGACCTTGGAGCAGCGGCGGTCGCC
AGTGCCGCCTACGGCTGGAATACCGCCTACTCCGGATTGGGGCCAGCGAG
AAGTCAGTTTCCATATGCCCAGTACGCCTCCGATTATTACGGCAATGCGG
TGGGCATGTCCTCCTCGGCCGCTTGGTTCTCGCATCAGGAGCGCCTCTAT
CAGCCATGGAGTTCACAGAGCTATCCGGGCTTCAATTTCGATGACATCGC
CTTCCAGACGCAATTGCAACGCCGCTCCGTTCGCTGCACGTGCCCCAATT
GCACCAACGAGATGAGCGGCCTGCCACCGATTGTGGGTCCGGATGAGCGC
GGACGCAAGCAGCATATCTGCCACATTCCGGGCTGCGAACGGCTATACGG
CAAGGCGTCGCATCTGAAGACCCACCTGCGCTGGCACACCGGCGAGCGGC
CCTTCCTGTGCCTCACGTGCGGCAAGCGTTTCTCCCGATCGGATGAGCTG
CAGCGACACGGACGTACGCACACCAATTACCGCCCGTATGCCTGCCCCAT
TTGCTCCAAGAAGTTTTCGCGCAGCGATCACCTCAGCAAGCACAAGAAGA
CCCATTTCAAGGACAAGAAGAGCAAGAAGGTACTGGCCGCCGAGGCCAAG
GAGCAGGCGGCTGCGGCGATAAAGCTGGAAAAGAAGGAGAAGAAGTCGGG
TAAGCCACTGACGCCACCCGTGGAATTCAAGCAGGAGCAGCCGGATACGA
CACCGCTGGTCAACTATGCGCCCTATGCCAATCTCTATCAGCATTCCACA
TCCGCCGGATCGAGTGTGAATCCTCCGCCGCCACCGCCGCCGCTCTTCCA
GCAGCAAATGACGACGACAACATCATCGGCGGCGGCCAGCTTTGTGGAGC
AGCCGTGGAGCAGTAGCAGCAGCCGTGCCATACAACCAGCCACTACCTCA
GCCAGTTCATCCTCATCCTCCAGCGCCAGTTCCCCAGCGGCAGCGGTCGT
TTCTGCCATTGGATCTGCATCTTCCCCAGCCGCATCAGCCACGGCGCTGG
CCCAGCATCATTATGCCGCACTTGCCATGCAAAGTGAGTCCCAGCTGGCG
GCGGAATATGGGCTAACCATGAGCGGATTGGCCAGCGGAGCTAGCCAGGA
TTCCAGCTCCAGTTGCCACATGAAGTCCGAGTATGCGGCCAGTTATCCGG
CTGATTTTGGTGCGGGAACAGCCAGTTACGGTTATCCGCATCCACATCCG
CACCATCACAATGCGTGGGCAGCGGCCTATCATCCACATGCCACCGCCTA
AAAGCTTTCTAGACCAT
BS29318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| btd-RA | 1935 | CG12653-PA | 1..1934 | 17..1950 | 9520 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| btd-RA | 2934 | CG12653-RA | 487..2422 | 15..1950 | 9530 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:19:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9695845..9697046 | 749..1950 | 5920 | 99.5 | Plus |
| X | 23542271 | X | 9694672..9695407 | 15..750 | 3620 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:19:41 has no hits.
BS29318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:34 Download gff for
BS29318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btd-RA | 487..2419 | 17..1949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:52 Download gff for
BS29318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btd-RA | 489..2421 | 17..1949 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:32 Download gff for
BS29318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btd-RA | 489..2421 | 17..1949 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:32 Download gff for
BS29318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9694674..9695407 | 17..750 | 99 | -> | Plus |
| X | 9695847..9697045 | 751..1949 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:52 Download gff for
BS29318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9588707..9589440 | 17..750 | 99 | -> | Plus |
| arm_X | 9589880..9591078 | 751..1949 | 99 | | Plus |
BS29318.pep Sequence
Translation from 16 to 1950
> BS29318.pep
MIDAACNYLNPYAQQHQAQQQQHAQHQQHAQQQQHHLHMQQAQHHLHLSH
QQAQQQHMQHLTQQQQQQQQQQQQQQQQQQQQQQPQQQQHDFLSAAALLS
APPSLSGSSSGSSSGSSPLYGKPPMKLELPYPQASSTGTASPNSSIQSAP
SSASVSPSIFPSPAQSFASISASPSTPTTTLAPPTTAAAGALAGSPTSSS
PSSSAASAAAAAAAAAAAAADLGAAAVASAAYGWNTAYSGLGPARSQFPY
AQYASDYYGNAVGMSSSAAWFSHQERLYQPWSSQSYPGFNFDDIAFQTQL
QRRSVRCTCPNCTNEMSGLPPIVGPDERGRKQHICHIPGCERLYGKASHL
KTHLRWHTGERPFLCLTCGKRFSRSDELQRHGRTHTNYRPYACPICSKKF
SRSDHLSKHKKTHFKDKKSKKVLAAEAKEQAAAAIKLEKKEKKSGKPLTP
PVEFKQEQPDTTPLVNYAPYANLYQHSTSAGSSVNPPPPPPPLFQQQMTT
TTSSAAASFVEQPWSSSSSRAIQPATTSASSSSSSSASSPAAAVVSAIGS
ASSPAASATALAQHHYAALAMQSESQLAAEYGLTMSGLASGASQDSSSSC
HMKSEYAASYPADFGAGTASYGYPHPHPHHHNAWAAAYHPHATA*
BS29318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| btd-PA | 644 | CG12653-PA | 1..644 | 1..644 | 3378 | 100 | Plus |
| Spps-PA | 968 | CG5669-PA | 501..839 | 37..430 | 447 | 32.1 | Plus |
| Spps-PB | 985 | CG5669-PB | 501..839 | 37..430 | 447 | 32.1 | Plus |
| Sp1-PD | 715 | CG1343-PD | 106..681 | 89..642 | 410 | 28.4 | Plus |
| Sp1-PF | 726 | CG1343-PF | 106..681 | 89..642 | 410 | 28.4 | Plus |
| Sp1-PD | 715 | CG1343-PD | 614..714 | 10..125 | 169 | 42.2 | Plus |
