BS29333.complete Sequence
2198 bp assembled on 2012-06-11
GenBank Submission: KX805034
> BS29333.complete
GAAGTTATCAGTCGACATGATGCCCGAAACTGAACGCGACGCACATTTGG
AGGCAGCTGAAATGGCCAGTGGCGCCCTGGCGCATAATTACGGTATTGTT
AAGGATCAGCAACAACAGCAGCAGCAGCAGCAACAACTGCATCACCTGCA
GCAGCAACATCATCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGT
CCAACTCCGATCTGTACAAGATGGCCTGCAATGGCTACAACTATAGCAGT
CCGCTGACCATACCGCCCACCTCGATGACCACGCACATGGTCAGTCCCAT
CGGGAACAGCAAGGAGAAGCTGGTGAATATGTTGCGCGTGCGTGACAACA
ACAACATGGCCAGCACGATCTCCGACAGTCCACCCACAACGTTTCTGCAA
AAGCAACTGGAGGCGGTTGTGGCGCCCCGGCCAAGTTCAGTGCATCCCCA
GCATCAGCAGCCGCAGCAGCAGACTGTCCAGCTGCAGCAGCAACGGCGTT
CGGTCAGCACACCTGCGATTACAACCACACCTGGTCCGCCCACCAATTGG
CATGCCCATGTCTATGATCGACTGCCGCCACACCCGACGCCCCACTCCAT
CGCCGATATCCTGGGCATGTCCTTTGTCAAAAAGGAACGGCCAGAGGTCG
CCTTTGATGCCCAAGGACCGGCCAAATCGCCGAATAGCATACTGAAACCG
TATCAGGAACAGCAGCCCATTCGAAGCTCCTCCATTTCGATGAGCGATGC
CAGCGAGGAGGAGAGTGCCGCTGTTGCTGGGGCAACATCTGCCGCAACAG
CAGCAGCAGCAGTGGCAGCAACCATCACAGCAGCAACTGTTGCAACTCCG
CTCGATCAGCCGCTAAATCTGTGTGTGGTCAAAAAGTCTCGCGACAGCAA
CAACTCACCCATGCCGGCCACCAAACAGAGCCAAATCCTCGGAAAGTCTG
CTACCAAGAAGGAAAGTTCTGGTAAGCCGGCGGCCAAGAAAAAGAAGCTA
TCGTCAACTGTGGCTCTACCACCGGATATCAGTCCAACGGGCAGCAGTGA
CAGTTTGATGCGGGACAAGTTGATGGCCAACAATAGCAGTTCGCCGGGCA
GCAATGTGAATGCGCAAATGCAGAGCAATGCGAACAGCACATTGGAGACC
ACCGAGGATGACTCCGATTCCGGTTCAACGGATGCGCGGCGAAAGAAGAA
GGCACGCACCACGTTCACCGGCAGGCAGATCTTCGAGCTGGAGAAGATGT
TCGAGAACAAAAAGTATCTCAGCGCCAGCGAGCGCACCGAAATGGCCAAG
CTGCTGATGGTCACCGAAACGCAGGTAAAGATCTGGTTCCAAAACCGGCG
CACCAAGTGGAAGAAACAGGACAATGTCACAAATAACGAGGCGGCGGAGC
ACAAATCCTCGAATGCGAAGCCAGGAGCAACAGGCACCGCAACAACAACG
CCAAGTGGAGAGCCGACCGACAAGAGATCCAGCAATGCGACTTCACCCAC
TGTTGGCAATGCCGCCACCATTGCGGAGATCAAGAAATCTCCAAAGTCTC
CAAATCGCGGCAGTAACAATAACAACAACAATACGTTAAACAACAATGTT
AATAACAGCGAGGGAAAAGTGCCCGCCAAACAGAGTACCACCAAGATTAA
AAAGCAGTTAAATGCGCTGCTGGAAAAGACAGTTAAAACGGCTAATCAAG
CACATCGAAGTGCAGAATTGGAGAGCAGCGATCAAAAGCCCGCAGTCGAA
AAAAGGCCAAATAATAGTAATGAAAATCAATTGCTACACCAGCGTTTGCA
TCAGCATGCCATACCTTTAACTGTAGAACCAGCCGCTCCACTCGAACAAA
CCGAGAAATTGGACATAAAACGAGAGGAGTCTCCGCAGCACAGGGAACTG
CAGTTAAGTCTCCAAAGGGCGGCAATTCAAAATGGCCAGCTAACGGAAAT
GGATTTTGAAAGCAAATTGGCCGCGAGTAAAATTTCCATTGCCTTGGCCA
TGGCCAACAAACAAATGCAGCCGGAAAAGAGGGTCAAAACCGAAAGTTCC
TCATCGGAGGGCGAAGGCGATGGAGACGGCGAGGAAGAGGAGGAGGAGGA
GGAGGTGTCCTCCAGCGAGCATGGCGATTCCATAGAAGCTCACGATTCCC
AGGATCAGGATGTCGCCATGCGGGAGATTTAAAAGCTTTCTAGACCAT
BS29333.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NK7.1-RD | 2166 | CG8524-PD | 1..2166 | 17..2182 | 10830 | 100 | Plus |
| NK7.1-RC | 2166 | CG8524-PC | 1..2166 | 17..2182 | 10830 | 100 | Plus |
| NK7.1-RB | 2166 | CG8524-PB | 1..2166 | 17..2182 | 10830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NK7.1-RD | 2731 | CG8524-RD | 482..2648 | 17..2183 | 10835 | 100 | Plus |
| NK7.1-RC | 3540 | CG8524-RC | 564..2730 | 17..2183 | 10835 | 100 | Plus |
| NK7.1-RB | 2996 | CG8524-RB | 747..2913 | 17..2183 | 10835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14344225..14345170 | 962..17 | 4730 | 100 | Minus |
| 3R | 32079331 | 3R | 14330223..14331085 | 2183..1321 | 4315 | 100 | Minus |
| 3R | 32079331 | 3R | 14341218..14341584 | 1328..962 | 1835 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 11:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3144..3197 | 1553..1606 | 117 | 68.5 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2637..2672 | 1561..1596 | 117 | 80.6 | Plus |
BS29333.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-11 09:14:47 Download gff for
BS29333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RB | 562..2725 | 17..2180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:44 Download gff for
BS29333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RA | 420..2583 | 17..2180 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:46:30 Download gff for
BS29333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NK7.1-RB | 747..2910 | 17..2180 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:46:30 Download gff for
BS29333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14330226..14331081 | 1325..2180 | 100 | <- | Minus |
| 3R | 14341222..14341583 | 963..1324 | 100 | <- | Minus |
| 3R | 14344225..14345170 | 17..962 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:44 Download gff for
BS29333.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10155948..10156803 | 1325..2180 | 100 | <- | Minus |
| arm_3R | 10166944..10167305 | 963..1324 | 100 | <- | Minus |
| arm_3R | 10169947..10170892 | 17..962 | 100 | | Minus |
BS29333.pep Sequence
Translation from 16 to 2181
> BS29333.pep
MMPETERDAHLEAAEMASGALAHNYGIVKDQQQQQQQQQQLHHLQQQHHH
QQQQQQQQQQQSNSDLYKMACNGYNYSSPLTIPPTSMTTHMVSPIGNSKE
KLVNMLRVRDNNNMASTISDSPPTTFLQKQLEAVVAPRPSSVHPQHQQPQ
QQTVQLQQQRRSVSTPAITTTPGPPTNWHAHVYDRLPPHPTPHSIADILG
MSFVKKERPEVAFDAQGPAKSPNSILKPYQEQQPIRSSSISMSDASEEES
AAVAGATSAATAAAAVAATITAATVATPLDQPLNLCVVKKSRDSNNSPMP
ATKQSQILGKSATKKESSGKPAAKKKKLSSTVALPPDISPTGSSDSLMRD
KLMANNSSSPGSNVNAQMQSNANSTLETTEDDSDSGSTDARRKKKARTTF
TGRQIFELEKMFENKKYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKK
QDNVTNNEAAEHKSSNAKPGATGTATTTPSGEPTDKRSSNATSPTVGNAA
TIAEIKKSPKSPNRGSNNNNNNTLNNNVNNSEGKVPAKQSTTKIKKQLNA
LLEKTVKTANQAHRSAELESSDQKPAVEKRPNNSNENQLLHQRLHQHAIP
LTVEPAAPLEQTEKLDIKREESPQHRELQLSLQRAAIQNGQLTEMDFESK
LAASKISIALAMANKQMQPEKRVKTESSSSEGEGDGDGEEEEEEEEVSSS
EHGDSIEAHDSQDQDVAMREI*
BS29333.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NK7.1-PD | 721 | CG8524-PD | 1..721 | 1..721 | 3665 | 100 | Plus |
| NK7.1-PC | 721 | CG8524-PC | 1..721 | 1..721 | 3665 | 100 | Plus |
| NK7.1-PB | 721 | CG8524-PB | 1..721 | 1..721 | 3665 | 100 | Plus |
| NK7.1-PA | 721 | CG8524-PA | 1..721 | 1..721 | 3665 | 100 | Plus |
| lms-PC | 378 | CG13424-PC | 16..214 | 328..514 | 228 | 35 | Plus |
