BS29414.complete Sequence
1286 bp assembled on 2014-07-18
GenBank Submission: KX806342
> BS29414.complete
GAAGTTATCAGTCGACATGGATCCCGACTGTTTTGCGATGTCCTCGTACC
AGTTCGTCAACTCGCTGGCCTCCTGTTATCCGCAGCAGATGAATCCGCAG
CAGAATCACCCGGGAGCGGGAAATTCGAGTGCAGGCGGCAGCGGTGGAGG
GGCGGGCGGTAGCGGGGGCGTGGTGCCCAGCGGCGGAACGAACGGCGGTC
AGGGCAGTGCGGGGGCGGCCACTCCGGGGGCGAACGACTACTTCCCAGCC
GCGGCGGCCTATACGCCTAACCTGTATCCAAACACACCGCAGGCCCACTA
CGCCAATCAGGCGGCCTACGGCGGACAGGGAAATCCGGATATGGTGGACT
ACACGCAGCTACAGCCGCAGCGACTGCTCCTGCAGCAGCAGCAGCAACAG
CAACAGCAGCAACATGCCCATGCAGCGGCAGCAGTTGCTGCCCAGCAGCA
GCAGCAACTCGCCCAGCAGCAACACCCGCAACAGCAGCAACAGCAGCAGC
AGGCGAACATCAGTTGCAAGTACGCCAACGATCCAGTGACGCCGGGCGGA
AGTGGGGGCGGGGGTGTTTCCGGTAGCAACAACAATAACAATAGCGCCAA
CAGCAACAACAACAACAGCCAGTCGCTAGCCAGTCCACAGGATCTGTCCA
CCAGGGACATATCGCCCAAACTGTCGCCCAGCTCAGTGGTAGAGAGTGTG
GCCCGATCGCTGAACAAGGGCGTCCTGGGCGGAAGCTTGGCGGCCGCCGC
TGCCGCCGCCGGCTTGAACAACAACCACAGCGGATCGGGAGTGTCCGGAG
GACCTGGAAACGTCAATGTTCCCATGCACAGTCCGGGGGGCGGGGATTCG
GACTCCGAGAGCGATAGCGGCAATGAGGCGGGCAGTAGCCAGAACAGCGG
CAATGGAAAGAAGAACCCGCCGCAGATATATCCGTGGATGAAGCGAGTAC
ATCTCGGGACGAGTACTGTGAATGCCAATGGCGAGACGAAACGACAACGG
ACCTCATACACCCGCTACCAGACGCTGGAGCTGGAGAAGGAGTTCCACTT
CAACCGCTACCTGACCCGCCGCCGCAGAATCGAGATCGCGCATGCCCTGT
GTCTCACGGAGCGGCAGATCAAGATCTGGTTCCAGAACCGGCGCATGAAG
TGGAAGAAGGAGCACAAGATGGCCTCGATGAACATCGTACCCTACCACAT
GGGTCCATATGGCCACCCGTACCACCAGTTCGATATCCATCCGTCGCAGT
TCGCGCACCTAAGCGCATAAAAGCTTTCTAGACCAT
BS29414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 15:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scr-RB | 1254 | CG1030-PB | 1..1253 | 17..1269 | 6265 | 100 | Plus |
| Scr-RA | 1254 | CG1030-PA | 1..1253 | 17..1269 | 6265 | 100 | Plus |
| Antp-RK | 1086 | CG1028-PK | 857..1021 | 1005..1169 | 540 | 88.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scr-RB | 3987 | CG1030-RB | 472..1724 | 17..1269 | 6265 | 100 | Plus |
| Scr-RA | 4140 | CG1030-RA | 625..1877 | 17..1269 | 6265 | 100 | Plus |
| Antp-RK | 4851 | CG1028-RK | 2587..2751 | 1005..1169 | 540 | 88.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 15:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6841233..6842180 | 964..17 | 4740 | 100 | Minus |
| 3R | 32079331 | 3R | 6825383..6825689 | 1269..963 | 1535 | 100 | Minus |
| 3R | 32079331 | 3R | 6898353..6898517 | 1169..1005 | 540 | 88.5 | Minus |
| 3R | 32079331 | 3R | 16658883..16659040 | 1162..1005 | 490 | 87.3 | Minus |
| 3R | 32079331 | 3R | 6801011..6801190 | 989..1168 | 450 | 83.3 | Plus |
| 3R | 32079331 | 3R | 6865321..6865475 | 1007..1161 | 400 | 83.9 | Plus |
| 3R | 32079331 | 3R | 16810162..16810317 | 1162..1007 | 390 | 83.3 | Minus |
Blast to na_te.dros performed 2014-11-28 15:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 613..725 | 231..126 | 126 | 60.2 | Minus |
BS29414.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-07-18 11:09:14 Download gff for
BS29414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scr-RA | 625..1876 | 17..1268 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:34:13 Download gff for
BS29414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scr-RA | 625..1876 | 17..1268 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:34:13 Download gff for
BS29414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6825384..6825689 | 963..1268 | 100 | <- | Minus |
| 3R | 6841235..6842180 | 17..962 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-07-18 11:09:14 Download gff for
BS29414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2651106..2651411 | 963..1268 | 100 | <- | Minus |
| arm_3R | 2666957..2667902 | 17..962 | 100 | | Minus |
BS29414.pep Sequence
Translation from 16 to 1269
> BS29414.pep
MDPDCFAMSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSG
GVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAA
YGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQ
QQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNN
SQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGL
NNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKN
PPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLT
RRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGH
PYHQFDIHPSQFAHLSA*
BS29414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 10:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scr-PB | 417 | CG1030-PB | 1..417 | 1..417 | 2226 | 100 | Plus |
| Scr-PA | 417 | CG1030-PA | 1..417 | 1..417 | 2226 | 100 | Plus |
| Antp-PJ | 378 | CG1028-PJ | 109..357 | 117..384 | 405 | 41.2 | Plus |
| Antp-PI | 378 | CG1028-PI | 109..357 | 117..384 | 405 | 41.2 | Plus |
| Antp-PL | 378 | CG1028-PL | 109..357 | 117..384 | 405 | 41.2 | Plus |
