BS29416.complete Sequence
1595 bp assembled on 2013-01-14
GenBank Submission: KX801680
> BS29416.complete
GAAGTTATCAGTCGACATGGACAACCATCACATGCATCAGGGTCTCCTGG
GTAAAGTGGAGGCGGGTGCGGCTGCCTTTGGCGGTGTCTATTCGCGTCAT
CCGTACGATTGGCCCTTCAATGCGGTTACCCACAAGGAGGCGGCCAGCGT
GAATTCCGGCTGGTGGGACATGCACAGTGCCGCCGGATCCTGGCTGGATA
TGGGTGGTGCGGGCATGCACTCAACAATGGCCAATTATGCGAGTGAGAAC
TATAGCTCCGCATTGAGTCATTCGCTGTTGGGATCGGGACAACATTTGCT
GCAGGACACCTACAAGAGCATGTTGCCCGGCCAGGGAGTTGGCGTTGGTG
TGGGCGTTGGCATGGGTGGCTTCTCCCTGCCTCACAGTTCACCATCGGCG
GCAGCAGCAGCTGCGGCCACAGCGGCAGCGGCGGCGGGTGGCTCCCCCCA
GGGTGGTTCACCATCGACACCATCACCCAGATCCCAAAGGCGTTATGCCG
GACGGGCCACATGCGATTGCCCGAATTGCCAGGAGGCGGAACGCCTGGGT
CCCGCTGGCGTTCATCTGCGCAAAAAGAACATCCATTCGTGTCACATACC
TGGCTGTGGCAAAGTGTATGGAAAGACGTCACATCTGAAGGCTCACCTGC
GGTGGCACACCGGCGAGCGTCCCTTTGTGTGCAACTGGCTGTTCTGCGGC
AAGCGTTTCACACGCTCCGACGAGCTGCAACGGCATTTGAGGACGCACAC
CGGCGAGAAGCGCTTTGCATGCCCCGTGTGCAATAAGCGCTTTATGCGCA
GCGACCATTTGGCCAAGCACGTGAAGACGCACAATGGCACGGCCAATCAC
CAGGCCAATGGCCACAATGGTGGGCTGAAGAAGGGCTCCTCGGAGTCGTG
TAGCGACTCGGAGGAGGCCGCCAACCAGTCGGGCGAGTCCAACGGGCTGG
GCGGCGTGGGCAGTGGCCCACAGACGGGCGGGGCCGGTGGCGGCGGGGGT
GGCTCTAGTTCGGGCAATGGTGCTGGTACGTTAGCGGTATCGGGATCGGT
GACCACCGGAGCGGGAGCTGGATCCGGTACGGGTAGCTCCAATTCCAATT
CCAATTCCGGTGGCTCAAGCGGTTCCGTTAGCGGTTCCGTATCCGGTTCT
GGCAGCCATCCCGGCACCCCGACCTCGCTGCACGCGCACAGCGCCAATGG
CACGTCCAGCAGCCTGCTGGGCGGCGGTCTGCACCTGGCCACGCCGCACC
AGATGGTCGCCGCGGGCGGTTCGCCGGTGATGCTTCACCAGCAGCAGCAG
CAGCAGCAACATCAGCAGCAACAGCAGCAACAGCAGCAGCAGCAGCATCA
ACAGCAGCAACAGCAGCAACATCAACAGCAGCAGCAGCAACATCAGCAGC
AGCAGCAGCAACACCACCAGCAACAGCAGCAGCATCATCACCAGCAATTT
GGCCAGCAGCAGCATCCCCATGCCCATCACCTGCACCACCATGCCCACCA
CGCGCACCACCTGGCCACCGGCGGCTCACCCGGTCTGGATCCCAGCTCCC
TTGTGGATATAAAGCCACCGATGGTTTAAAAGCTTTCTAGACCAT
BS29416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp1-RF | 2181 | CG1343-PF | 584..2146 | 15..1577 | 7770 | 99.8 | Plus |
| Sp1-RE | 2163 | CG1343-PE | 599..2161 | 15..1577 | 7770 | 99.8 | Plus |
| Sp1-RD | 2148 | CG1343-PD | 584..2146 | 15..1577 | 7770 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp1-RF | 3593 | CG1343-RF | 1500..3062 | 15..1577 | 7770 | 99.8 | Plus |
| Sp1-RE | 3763 | CG1343-RE | 1099..2661 | 15..1577 | 7770 | 99.8 | Plus |
| Sp1-RD | 3593 | CG1343-RD | 1500..3062 | 15..1577 | 7770 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9753705..9755267 | 15..1577 | 7770 | 99.8 | Plus |
| 3R | 32079331 | 3R | 24224190..24224390 | 832..632 | 285 | 76.1 | Minus |
Blast to na_te.dros performed 2014-11-28 13:06:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 669..784 | 434..318 | 123 | 57.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2379 | 390..432 | 116 | 74.4 | Plus |
BS29416.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-15 17:08:36 Download gff for
BS29416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp1-RB | 1281..2841 | 17..1577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:56 Download gff for
BS29416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp1-RD | 1502..3062 | 17..1577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:22 Download gff for
BS29416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sp1-RD | 1502..3062 | 17..1577 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:22 Download gff for
BS29416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9753707..9755267 | 17..1577 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:56 Download gff for
BS29416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9647740..9649300 | 17..1577 | 99 | | Plus |
BS29416.pep Sequence
Translation from 16 to 1578
> BS29416.pep
MDNHHMHQGLLGKVEAGAAAFGGVYSRHPYDWPFNAVTHKEAASVNSGWW
DMHSAAGSWLDMGGAGMHSTMANYASENYSSALSHSLLGSGQHLLQDTYK
SMLPGQGVGVGVGVGMGGFSLPHSSPSAAAAAAATAAAAAGGSPQGGSPS
TPSPRSQRRYAGRATCDCPNCQEAERLGPAGVHLRKKNIHSCHIPGCGKV
YGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRF
ACPVCNKRFMRSDHLAKHVKTHNGTANHQANGHNGGLKKGSSESCSDSEE
AANQSGESNGLGGVGSGPQTGGAGGGGGGSSSGNGAGTLAVSGSVTTGAG
AGSGTGSSNSNSNSGGSSGSVSGSVSGSGSHPGTPTSLHAHSANGTSSSL
LGGGLHLATPHQMVAAGGSPVMLHQQQQQQQHQQQQQQQQQQQHQQQQQQ
QHQQQQQQHQQQQQQHHQQQQQHHHQQFGQQQHPHAHHLHHHAHHAHHLA
TGGSPGLDPSSLVDIKPPMV*
BS29416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sp1-PF | 726 | CG1343-PF | 196..715 | 1..520 | 2835 | 100 | Plus |
| Sp1-PE | 720 | CG1343-PE | 201..720 | 1..520 | 2835 | 100 | Plus |
| Sp1-PD | 715 | CG1343-PD | 196..715 | 1..520 | 2835 | 100 | Plus |
| Sp1-PB | 520 | CG1343-PB | 1..520 | 1..520 | 2835 | 100 | Plus |
| Spps-PA | 968 | CG5669-PA | 681..889 | 124..351 | 501 | 46.5 | Plus |
