BS29424.complete Sequence
1889 bp assembled on 2013-01-14
GenBank Submission: KX805968
> BS29424.complete
GAAGTTATCAGTCGACATGGAGAACGTGTGTCAGTGCTGCAAGGTACGAC
CGGGCTTGTCGGTCAAACGCGGTGGCTCGCTTCCGAAAACCCTTTGCCTG
CAGTGCCTGCATATGGACACATTTGGCACCAAGCATAAGGGACCAAGGCC
CGAAACCCAAATTAACGACAAGGTTCACTTAGAAATGTCCATAAACGGCG
AAGACGGCCTGCCGGAGCATCCTTTATATCCAGAAGTGCAACTGGTAGTT
AAGGAGGAGGACGCTCTAATTAAGAAGAAGGTTATCGAGGAAAACCACAT
ACATAATGAGGAGATCATAGGAGCGAGCAACATAGTAGACGTAGAGGTTC
ATGAGAATCATCGCGCAAATAACGACGTGATCCTCATACAGGATTCCTTC
GCTGAGGAGGTAATTCTTGAGGATCATCCCGCAAATAACGACGTGATCAT
CATACAGGATTCCGTCGCTGAGGAGGAGCTCCCCGTAATTAAGGAGGAGG
CTATTGAAGGGGAGGACTTGCAGGGAGAATACTTTATAATAACAGAATGT
CTGGAAGAGCCAGCAATCGGAAGCTGTCGCGTTTGCTTGGAACAGTCTGA
CAACTTAACCAATATATTTGATGACGCGCATCAGTACGGAATTCCGATTG
CCACGATACTCTCTCAGTACACAGGAATGCCAGTTGAGAAAGGCGATTCA
TTTTCTGAATATATCTGTGTAACTTGTCTGGATGTTGTGAAAAATGCATT
CGATGATTTAGAGTCTAAAGAAAATACTATCCAGATGTACCGACAACCTA
AAGAGGAGATCATTGACATAGATTCAATTCCAGTAAAAAACAAGCCAGTT
GATTATGAAGTTACTGGGAAGCCACCTCACAGATGCCCTCAGTGCCCAAA
GATATTCTTACTCGCCGCCAAACTTCAAGCTCACATTCGGACTCATAATG
AAACGCGTACCACCGAGCCTCCACGGCTGAAATGTCCCATGTGTCCAAGT
ATATATATGAAACGCGGATGTCTTGAAGCCCATATGTGGATTCATAGGGC
CTCTGATGAAAGAGAATCAGAGTTGGAGCCTCCGTACAGGTGCCCTCACT
GTCCAAAACTGTTCCTTTACTCCAGCTTTCTTGAAATTCACATTCAGACA
CATGAGGATGTCTCTCAGAGACTGTCTCGGAAGTCATCGCACAAGTGCGC
GCAGTGTGCAGATGTATTCTCAGACGTGTCCAGCCTTAAAGACCACGTAA
AAATCCACGCGGGGGAACGAACGTTCAAATGTCCCCTCTGCCTGATGTCC
TTTCAAGAAGAAAGTAACCTAAAGAGTCACGATTGTGCTCACACTCGTTT
CAAGTGCCACAAGTGTTCCAAGTTTTTCGAAAGTCAGAATTATCTAGATT
TTCACTTCAAGAAAAGTCACACGACGAAAGGTCCGTTCAAGTGCATAAAG
TGCCAGCAAACTTTTCAAAAAAGAAACGGTCTTAAAGAACACATCAGTTC
GCAGGTTTGCGTACAATTTCTCCGGAGTAAGTCTCCTGGACAAATATTCC
CTTGTCCCAAATGCCCGAAAAAATTTAGCATAGAAGACAATTATCAAATG
CACCACGCCACTCACAAGAAAGTAAAGACTGTTATCGAGAGGCACAACTG
TACACAGTGCAAAAAGTCCTATCAAAATAAAAAACTTCTTACCAAGCACA
TTTTGAGTCACAACCGGTGTGTCCACTGCTCGATGTCCTTTACGAGCAAA
TATCTTCTGGAGCAGCACACTTGTTCCCAGAGTTACCAATTAAATGGGAG
CAGGGGTCGCAAAAATCCTAATTTGAACTACAACGAATGCGAGGAGTCCA
ACGAAAGTGATTTGGAACCATAAAAGCTTTCTAGACCAT
BS29424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:06:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17612-RA | 1857 | CG17612-PA | 1..1856 | 17..1872 | 9280 | 100 | Plus |
| CG17612-RB | 1857 | CG17612-PB | 1..1856 | 17..1872 | 9280 | 100 | Plus |
| CG17612-RA | 1857 | CG17612-PA | 332..394 | 414..476 | 240 | 92.1 | Plus |
| CG17612-RA | 1857 | CG17612-PA | 398..460 | 348..410 | 240 | 92.1 | Plus |
| CG17612-RB | 1857 | CG17612-PB | 332..394 | 414..476 | 240 | 92.1 | Plus |
| CG17612-RB | 1857 | CG17612-PB | 398..460 | 348..410 | 240 | 92.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17612-RA | 1940 | CG17612-RA | 23..1878 | 17..1872 | 9280 | 100 | Plus |
| CG17612-RB | 1961 | CG17612-RB | 44..1899 | 17..1872 | 9280 | 100 | Plus |
| CG17612-RA | 1940 | CG17612-RA | 354..416 | 414..476 | 240 | 92.1 | Plus |
| CG17612-RA | 1940 | CG17612-RA | 420..482 | 348..410 | 240 | 92.1 | Plus |
| CG17612-RB | 1961 | CG17612-RB | 375..437 | 414..476 | 240 | 92.1 | Plus |
| CG17612-RB | 1961 | CG17612-RB | 441..503 | 348..410 | 240 | 92.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4380784..4382639 | 1872..17 | 9280 | 100 | Minus |
| 2L | 23513712 | 2L | 4382180..4382242 | 410..348 | 240 | 92.1 | Minus |
| 2L | 23513712 | 2L | 4382246..4382308 | 476..414 | 240 | 92.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:06:43 has no hits.
BS29424.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-15 17:08:37 Download gff for
BS29424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17612-RB | 28..1882 | 17..1871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:58 Download gff for
BS29424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17612-RB | 44..1898 | 17..1871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:21:25 Download gff for
BS29424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17612-RB | 44..1898 | 17..1871 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:21:25 Download gff for
BS29424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4380785..4382639 | 17..1871 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:58 Download gff for
BS29424.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4380785..4382639 | 17..1871 | 100 | | Minus |
BS29424.pep Sequence
Translation from 16 to 1872
> BS29424.pep
MENVCQCCKVRPGLSVKRGGSLPKTLCLQCLHMDTFGTKHKGPRPETQIN
DKVHLEMSINGEDGLPEHPLYPEVQLVVKEEDALIKKKVIEENHIHNEEI
IGASNIVDVEVHENHRANNDVILIQDSFAEEVILEDHPANNDVIIIQDSV
AEEELPVIKEEAIEGEDLQGEYFIITECLEEPAIGSCRVCLEQSDNLTNI
FDDAHQYGIPIATILSQYTGMPVEKGDSFSEYICVTCLDVVKNAFDDLES
KENTIQMYRQPKEEIIDIDSIPVKNKPVDYEVTGKPPHRCPQCPKIFLLA
AKLQAHIRTHNETRTTEPPRLKCPMCPSIYMKRGCLEAHMWIHRASDERE
SELEPPYRCPHCPKLFLYSSFLEIHIQTHEDVSQRLSRKSSHKCAQCADV
FSDVSSLKDHVKIHAGERTFKCPLCLMSFQEESNLKSHDCAHTRFKCHKC
SKFFESQNYLDFHFKKSHTTKGPFKCIKCQQTFQKRNGLKEHISSQVCVQ
FLRSKSPGQIFPCPKCPKKFSIEDNYQMHHATHKKVKTVIERHNCTQCKK
SYQNKKLLTKHILSHNRCVHCSMSFTSKYLLEQHTCSQSYQLNGSRGRKN
PNLNYNECEESNESDLEP*
BS29424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17612-PA | 618 | CG17612-PA | 1..618 | 1..618 | 3361 | 100 | Plus |
| CG17612-PB | 618 | CG17612-PB | 1..618 | 1..618 | 3361 | 100 | Plus |
| CG15436-PA | 346 | CG15436-PA | 5..342 | 187..563 | 469 | 30 | Plus |
| Meics-PB | 571 | CG8474-PB | 283..563 | 283..584 | 446 | 32 | Plus |
| Meics-PA | 583 | CG8474-PA | 295..575 | 283..584 | 446 | 32 | Plus |
| CG15436-PA | 346 | CG15436-PA | 114..340 | 380..584 | 255 | 25.9 | Plus |
| Meics-PB | 571 | CG8474-PB | 451..567 | 283..414 | 170 | 30.3 | Plus |
