BS29427.complete Sequence
1352 bp assembled on 2012-10-18
GenBank Submission: KX801415
> BS29427.complete
GAAGTTATCAGTCGACATGAAAACTGAGTCCAACGAGAAGTGGGTGGTGT
GCCGCGTTTGCCTGAACAATCCCAGCGAGGGCGAGGAGCTGCTCCACGAC
ATATTCAGCGAAACGGCAAGCACGCGACTGGACCAAATGCTGCACATTTG
CGCAGGCATTCCAGTCAGCCTAGATGACAACTTCCCGGACAAGATGTGCA
GCAAGTGCGTGCGCTGCCTGCGGCTCTGCTACAAGTTCCGTCTGACATGC
CAGCGATCCCATCAGCACATTATGGACATGCTGGACCGGGAGGCCAGCAA
TGCTAACGCCGCCGGCGAAGGGGATTTGCTTAGCATCGCGGAGGACCTTT
CGGTGGAGAGCGTACTGAAGTCGTGGGAGGACTACGCCAGTCAGCTGGAT
GGCGGCATGAAAGTGGAGGGCGAGGAGGATCAGCAACATCAGGTTATCAC
CTATGTCGTGGAGGATGGTGATACTGATGATACCAATATGTTCGATGTGC
ACGATCCCACGCAGCCGGTGCCAAATGAGATCGAGGAGGCTGAAACCTAT
GCTGAATACGAGGAATACGAACTGCTCACCAACGAAAACTCGCCGGAAAT
CGCACAGGAAAAAGGCTCCACCGGCACAGATGTTGCCACAGAGGAGCCGC
CCGAAGAAGAAATTGCTGAAGACATACTCGACTCTGACGAAGATTATGAC
CCAACTCATGCTAAGCCGGAAAAATGCGACCGATCGGGCAGGAAGCCAGT
TGCATACCACAAGAATAGCCCAAAAGTGGAAACCTTCAAAAAGAAGGTGG
GCAGAAAGCCGCGCAACAAGCTGAGCACATACATCTGCGATGTGTGCGGA
AATATCTATCCGACTCAGGCGCGTCTCACCGAGCACATGAAATTCCATTC
TGGTGTTAAACCACACGAGTGCGAGATCTGCGGAAGAGGCTTTGTGCAGA
ATCAACAGCTGGTACGGCACATGAACACTCACACGGGGAACCGACCATAC
AAGTGCAACTACTGTCCAGCTGCCTTCGCCGATCGATCCACGAAAACCAA
ACATCATAGAATTCACACTAAGGAGCGTCCCTACGTGTGCGACGTTTGCT
CCAGAACGTTTACCTACTCGGACAACCTGAAGTTCCACAAGATGATTCAC
ACGGGGGAGAAGCCGCATGTCTGTGATCTTTGTGGCAAAGGATTTGTGAA
GGCCTACAAATTGCGTTTGCATCGGGAAACGCATAATAGACGTATCACCT
GGAGAAATGACGCAGAAGAGAGCACCAAAGCAGAAGATGTCAAGGGGGAA
ACGCCGGAGTTTCTCAATGAACTCCCCAAAGAGTAAAAGCTTTCTAGACC
AT
BS29427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trem-RA | 1320 | CG4413-PA | 1..1318 | 17..1334 | 6590 | 100 | Plus |
| CG4936-RA | 1566 | CG4936-PA | 1078..1464 | 830..1216 | 570 | 76.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trem-RA | 1525 | CG4413-RA | 99..1417 | 16..1334 | 6595 | 100 | Plus |
| CG4936-RA | 1824 | CG4936-RA | 1195..1581 | 830..1216 | 570 | 76.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20030248..20031009 | 925..164 | 3810 | 100 | Minus |
| 3R | 32079331 | 3R | 20029668..20029831 | 1334..1171 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 20031062..20031211 | 165..16 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 20030058..20030192 | 1059..925 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 20029891..20030003 | 1170..1058 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 20033514..20033623 | 1058..1167 | 235 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:53:56 has no hits.
BS29427.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:08 Download gff for
BS29427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trem-RA | 94..1411 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:18 Download gff for
BS29427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trem-RA | 94..1411 | 17..1334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:20 Download gff for
BS29427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trem-RA | 100..1417 | 17..1334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:20 Download gff for
BS29427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20029668..20029831 | 1171..1334 | 100 | <- | Minus |
| 3R | 20029891..20030001 | 1060..1170 | 100 | <- | Minus |
| 3R | 20030058..20030192 | 925..1059 | 100 | <- | Minus |
| 3R | 20030249..20031009 | 164..924 | 100 | <- | Minus |
| 3R | 20031064..20031210 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:18 Download gff for
BS29427.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15855390..15855553 | 1171..1334 | 100 | <- | Minus |
| arm_3R | 15855613..15855723 | 1060..1170 | 100 | <- | Minus |
| arm_3R | 15855780..15855914 | 925..1059 | 100 | <- | Minus |
| arm_3R | 15855971..15856731 | 164..924 | 100 | <- | Minus |
| arm_3R | 15856786..15856932 | 17..163 | 100 | | Minus |
BS29427.pep Sequence
Translation from 16 to 1335
> BS29427.pep
MKTESNEKWVVCRVCLNNPSEGEELLHDIFSETASTRLDQMLHICAGIPV
SLDDNFPDKMCSKCVRCLRLCYKFRLTCQRSHQHIMDMLDREASNANAAG
EGDLLSIAEDLSVESVLKSWEDYASQLDGGMKVEGEEDQQHQVITYVVED
GDTDDTNMFDVHDPTQPVPNEIEEAETYAEYEEYELLTNENSPEIAQEKG
STGTDVATEEPPEEEIAEDILDSDEDYDPTHAKPEKCDRSGRKPVAYHKN
SPKVETFKKKVGRKPRNKLSTYICDVCGNIYPTQARLTEHMKFHSGVKPH
ECEICGRGFVQNQQLVRHMNTHTGNRPYKCNYCPAAFADRSTKTKHHRIH
TKERPYVCDVCSRTFTYSDNLKFHKMIHTGEKPHVCDLCGKGFVKAYKLR
LHRETHNRRITWRNDAEESTKAEDVKGETPEFLNELPKE*
BS29427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trem-PA | 439 | CG4413-PA | 1..439 | 1..439 | 2397 | 100 | Plus |
| CG4936-PA | 521 | CG4936-PA | 16..497 | 5..409 | 819 | 40 | Plus |
| CG14710-PB | 415 | CG14710-PB | 10..405 | 12..419 | 479 | 28.2 | Plus |
| CG4854-PA | 319 | CG4854-PA | 93..314 | 173..408 | 471 | 41.2 | Plus |
| CG14711-PA | 377 | CG14711-PA | 3..374 | 8..420 | 431 | 27.7 | Plus |
| CG4854-PA | 319 | CG4854-PA | 1..317 | 1..353 | 218 | 21.8 | Plus |
