BS29431.complete Sequence
2108 bp assembled on 2012-05-15
GenBank Submission: KX800692
> BS29431.complete
GAAGTTATCAGTCGACATGTCCAGGTCGCGTTCATCCGCTAAAGCCGTGC
AGTTCAAGCACGAATCGGAGGAAGAGGAAGAAGACGAGGAGGAGCAGCTG
CCTTCCAGGAGAATGCACTCTTACGGAGACGCCGCGGCCATCGGAAGCGG
GGTGCCGGCCTTTTTGGCCAAATTGTGGCGCCTGGTGGACGATGCCGATA
CCAATCGCTTGATTTGCTGGACCAAGGATGGCCAAAGTTTCGTTATACAA
AATCAAGCGCAATTCGCCAAGGAACTATTGCCACTAAACTACAAGCACAA
CAACATGGCCAGCTTCATAAGGCAATTGAATATGTATGGATTCCACAAGA
TCACCTCTATTGACAATGGCGGACTACGTTTTGATCGCGACGAGATTGAA
TTTTCGCACCCATTTTTTAAGCGCAACTCGCCTTTTCTACTTGACCAAAT
CAAAAGGAAAATATCGAACAACAAAAATGGTGACGACAAAGGTGTCCTGA
AGCCGGAGGCCATGTCGAAGATTCTCACCGATGTGAAAGTCATGCGGGGT
CGTCAGGACAATCTGGATTCGCGCTTCTCCGCCATGAAACAGGAGAACGA
AGTGCTGTGGCGCGAGATAGCCAGCCTGCGCCAAAAGCACGCTAAGCAGC
AACAAATAGTCAACAAACTGATCCAGTTCCTCATTACCATTGTGCAACCG
TCGCGCAACATGTCTGGCGTGAAACGCCACGTGCAGCTGATGATCAACAA
TACGCCGGAAATTGATCGTGCACGGACCACCAGTGAGACCGAGAGCGAGA
GTGGCGGCGGACCGGTTATCCACGAGCTTAGGGAGGAGCTTCTTGATGAG
GTGATGAATCCATCACCGGCTGGCTACACCGCAGCCTCACATTATGACCA
AGAGAGCGTCTCTCCGCCTGCCGTTGAGCGTCCGCGATCTAACATGAGCA
TTAGCTCGCACAACGTCGATTATTCGAATCAGAGTGTGGAGGACTTGCTG
CTCCAGGGAAATGGAACCGCTGGCGGTAATATTCTAGTAGGCGGAGCCGC
TTCTCCCATGGCCCAAAGTGTGAGTCAATCGCCGGCCCAACATGATGTCT
ACACAGTCACCGAGGCGCCCGATTCTCATGTCCAGGAGGTGCCAAACAGT
CCGCCTTATTACGAGGAGCAGAATGTGCTTACCACGCCCATGGTGCGGGA
GCAGGAGCAGCAGAAGCGTCAGCAGCTTAAGGAGAACAACAAGCTACGAC
GACAGGCAGGAGATGTTATACTTGATGCTGGAGATATTCTCGTAGATAGT
TCGTCGCCCAAGGCGCAACGGACAAGCATCCAGCATAGTACGCAACCTGA
TGTGATGGTCCAGCCAATGATTATAAAGTCTGAGCCGGAGAACAGTTCCG
GACTGATGGATCTAATGACTCCCGCGAACGATCTGTACAGTGTTAACTTC
ATCAGTGAGGATATGCCGACGGATATTTTTGAAGACGCTCTGCTTCCCGA
CGGCGTGGAAGAGGCAGCCAAACTGGACCAGCAACAAAAATTTGGGCAAT
CGACAGTGAGCAGCGGCAAGTTTGCCAGCAACTTCGATGTGCCCACCAAC
AGTACGCTGCTGGATGCCAATCAGGCCTCGACATCGAAGGCAGCGGCCAA
GGCGCAAGCATCTGAGGAAGAGGGCATGGCTGTGGCCAAATACAGTGGCG
CTGAGAACGGAAACAACCGCGATACCAACAACAGTCAACTCCTCAGGATG
GCCTCAGTTGACGAACTCCACGGGCACTTGGAAAGCATGCAAGATGAGTT
GGAAACACTGAAGGATCTGCTGCGTGGCGATGGGGTGGCCATTGATCAGA
ACATGCTCATGGGTCTGTTTAACGACTCTGATCTAATGGACAACTATGGC
CTATCGTTTCCCAATGACAGCATAAGCAGTGAAAAGAAAGCACCCAGTGG
CTCTGAACTGATTTCCTATCAGCCCATGTATGATCTGTCCGACATTTTGG
ACACGGACGATGGCAACAATGACCAGGAGGCCAGCAGGCGCCAGATGCAG
ACGCAAAGTTCGGTTTTAAATACGCCACGTCACGAGTTGTAAAAGCTTTC
TAGACCAT
BS29431.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2076 | CG5748-PA | 1..2076 | 17..2092 | 10380 | 100 | Plus |
| Hsf-RC | 2130 | CG5748-PC | 1..1848 | 17..1864 | 9240 | 100 | Plus |
| Hsf-RD | 2202 | CG5748-PD | 1..1742 | 17..1758 | 8710 | 100 | Plus |
| Hsf-RC | 2130 | CG5748-PC | 1903..2130 | 1865..2092 | 1140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2771 | CG5748-RA | 244..2319 | 17..2092 | 10380 | 100 | Plus |
| Hsf-RC | 2838 | CG5748-RC | 257..2104 | 17..1864 | 9240 | 100 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 244..1985 | 17..1758 | 8710 | 100 | Plus |
| Hsf-RC | 2838 | CG5748-RC | 2159..2386 | 1865..2092 | 1140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18131793..18132941 | 1484..336 | 5745 | 100 | Minus |
| 2R | 25286936 | 2R | 18131460..18131734 | 1758..1484 | 1375 | 100 | Minus |
| 2R | 25286936 | 2R | 18133870..18134080 | 227..17 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18130755..18130908 | 2092..1939 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 18133004..18133114 | 335..225 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 18131282..18131387 | 1864..1759 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 18130970..18131045 | 1940..1865 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:20:17 has no hits.
BS29431.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-15 10:36:41 Download gff for
BS29431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RA | 241..2314 | 17..2090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:09 Download gff for
BS29431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RA | 244..2317 | 17..2090 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:40:48 Download gff for
BS29431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RA | 244..2317 | 17..2090 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:40:48 Download gff for
BS29431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18131460..18131734 | 1484..1758 | 100 | <- | Minus |
| 2R | 18131282..18131387 | 1759..1864 | 100 | <- | Minus |
| 2R | 18130757..18130906 | 1941..2090 | 100 | <- | Minus |
| 2R | 18130970..18131045 | 1865..1940 | 100 | <- | Minus |
| 2R | 18131794..18132941 | 336..1483 | 100 | <- | Minus |
| 2R | 18133004..18133112 | 227..335 | 100 | <- | Minus |
| 2R | 18133871..18134080 | 17..226 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:09 Download gff for
BS29431.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14018787..14018892 | 1759..1864 | 100 | <- | Minus |
| arm_2R | 14018965..14019239 | 1484..1758 | 100 | <- | Minus |
| arm_2R | 14018262..14018411 | 1941..2090 | 100 | <- | Minus |
| arm_2R | 14018475..14018550 | 1865..1940 | 100 | <- | Minus |
| arm_2R | 14019299..14020446 | 336..1483 | 100 | <- | Minus |
| arm_2R | 14020509..14020617 | 227..335 | 100 | <- | Minus |
| arm_2R | 14021376..14021585 | 17..226 | 100 | | Minus |
BS29431.pep Sequence
Translation from 16 to 2091
> BS29431.pep
MSRSRSSAKAVQFKHESEEEEEDEEEQLPSRRMHSYGDAAAIGSGVPAFL
AKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASF
IRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRKIS
NNKNGDDKGVLKPEAMSKILTDVKVMRGRQDNLDSRFSAMKQENEVLWRE
IASLRQKHAKQQQIVNKLIQFLITIVQPSRNMSGVKRHVQLMINNTPEID
RARTTSETESESGGGPVIHELREELLDEVMNPSPAGYTAASHYDQESVSP
PAVERPRSNMSISSHNVDYSNQSVEDLLLQGNGTAGGNILVGGAASPMAQ
SVSQSPAQHDVYTVTEAPDSHVQEVPNSPPYYEEQNVLTTPMVREQEQQK
RQQLKENNKLRRQAGDVILDAGDILVDSSSPKAQRTSIQHSTQPDVMVQP
MIIKSEPENSSGLMDLMTPANDLYSVNFISEDMPTDIFEDALLPDGVEEA
AKLDQQQKFGQSTVSSGKFASNFDVPTNSTLLDANQASTSKAAAKAQASE
EEGMAVAKYSGAENGNNRDTNNSQLLRMASVDELHGHLESMQDELETLKD
LLRGDGVAIDQNMLMGLFNDSDLMDNYGLSFPNDSISSEKKAPSGSELIS
YQPMYDLSDILDTDDGNNDQEASRRQMQTQSSVLNTPRHEL*
BS29431.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-PA | 691 | CG5748-PA | 1..691 | 1..691 | 3526 | 100 | Plus |
| Hsf-PC | 709 | CG5748-PC | 1..709 | 1..691 | 3497 | 97.5 | Plus |
| Hsf-PB | 715 | CG5748-PB | 1..715 | 1..691 | 3491 | 96.6 | Plus |
| Hsf-PD | 733 | CG5748-PD | 1..733 | 1..691 | 3462 | 94.3 | Plus |
