BS29502.complete Sequence
1715 bp assembled on 2012-10-18
GenBank Submission: KX801242
> BS29502.complete
GAAGTTATCAGTCGACATGAGCCAGATGACCCAGAAAACGGTGCAATTCC
ACGAGCTGGAGCTGGATCAGCGCATCCTTAAGGCGGTGGCCCAGCTGGGT
TGGCAGCAGCCCACACTTATCCAGTCGACGGCGATACCGCTGCTTCTGGA
GGGCAAGGATGTGGTGGTGCGCGCCCGCACCGGATCCGGCAAGACTGCCA
CCTACGCCCTGCCACTGATTCAGAAGATCCTTAACTCCAAACTGAACGCC
AGCGAGCAGTATGTGAGCGCTGTGGTCCTGGCGCCCACCAAGGAGCTATG
CCGGCAGTCCCGTAAGGTGATCGAGCAGCTGGTCGAGTCCTGCGGCAAGG
TTGTACGCGTGGCGGACATTGCCGATAGCTCCAACGACACGGTGACCCAG
CGGCACGCCTTGTCTGAAAGTCCCGACATTGTGGTTGCCACACCCGCCAA
TTTGCTGGCCTACGCCGAGGCTGGTAGCGTGGTGGATCTGAAGCATGTGG
AGACCTTGGTGGTGGACGAGGCGGATCTGGTGTTTGCCTATGGCTACGAA
AAGGACTTCAAGCGGTTGATTAAGCACCTGCCTCCCATCTACCAGGCTGT
CCTAGTCTCCGCTACTCTAACCGACGATGTGGTGCGCATGAAAGGCCTGT
GCCTGAACAACCCGGTTACGCTTAAACTCGAGGAGCCGGAGTTGGTGCCG
CAAGATCAGTTGTCGCACCAGCGCATTCTGGCTGAGGAAAACGATAAACC
GGCTATCTTGTACGCCTTATTGAAGCTGAGACTCATACGCGGCAAGAGCA
TAATCTTTGTGAACAGCATCGATCGGTGTTACAAGGTTCGATTGTTCCTA
GAGCAGTTCGGCATCCGTGCCTGTGTCTTGAACTCCGAGCTGCCTGCCAA
CATTCGCATCCACACAATTAGCCAGTTCAACAAGGGCACCTACGACATAA
TCATTGCCTCCGACGAACATCATATGGAAAAGCCAGGAGGCAAATCAGCG
ACTAACCGAAAATCTCCTCGAAGCGGCGACATGGAGTCGAGTGCTTCCCG
CGGCATTGACTTTCAGTGCGTGAACAACGTAATCAACTTCGACTTCCCCA
GGGATGTCACGTCTTATATCCATCGGGCTGGCAGGACGGCTAGAGGAAAT
AACAAGGGCTCCGTCTTGTCCTTTGTCAGCATGAAGGAGTCCAAGGTAAA
CGATTCAGTTGAGAAGAAACTGTGCGATAGTTTTGCAGCCCAAGAGGGCG
AACAGATCATCAAGAACTACCAGTTTAAAATGGAAGAAGTTGAGTCCTTC
CGTTATCGTGCTCAGGATTGCTGGCGGGCCGCAACTCGCGTAGCTGTTCA
CGACACTCGAATTCGAGAGATAAAGATAGAGATCCTCAACTGCGAGAAAC
TAAAGGCATTTTTCGAGGAGAACAAACGCGATCTGCAAGCGCTTCGGCAC
GACAAGCCTCTGCGCGCCATCAAGGTACAGAGTCATCTCTCTGACATGCC
CGAGTACATAGTGCCAAAGGCCCTGAAGCGAGTGGTTGGAACGTCCTCTT
CCCCTGTCGGAGCCTCGGAAGCCAAACAGCCACGACAGTCGGCCGCCAAG
GCTGCCTTCGAGCGGCAGGTCAATGATCCTCTGATGGCTAGCCAGGTGGA
CTTCGGGAAACGGCGTCCTGCCCACCGGAGAAAAAAGAAGGCGTTGTAGA
AGCTTTCTAGACCAT
BS29502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hlc-RB | 1683 | CG1666-PB | 1..1683 | 17..1699 | 8415 | 100 | Plus |
| Hlc-RA | 1683 | CG1666-PA | 1..1683 | 17..1699 | 8415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hlc-RB | 1963 | CG1666-RB | 95..1778 | 16..1699 | 8420 | 100 | Plus |
| Hlc-RA | 2116 | CG1666-RA | 95..1778 | 16..1699 | 8420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21386973..21387735 | 835..73 | 3785 | 99.7 | Minus |
| X | 23542271 | X | 21385856..21386295 | 1699..1260 | 2185 | 99.8 | Minus |
| X | 23542271 | X | 21386349..21386786 | 1264..827 | 2160 | 99.5 | Minus |
| X | 23542271 | X | 21387785..21387852 | 83..16 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:55:37 has no hits.
BS29502.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:14 Download gff for
BS29502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hlc-RA | 90..1772 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:34 Download gff for
BS29502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hlc-RA | 96..1778 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:00 Download gff for
BS29502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hlc-RA | 96..1778 | 17..1699 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:00 Download gff for
BS29502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21386350..21386778 | 835..1263 | 100 | <- | Minus |
| X | 21385856..21386291 | 1264..1699 | 100 | <- | Minus |
| X | 21386974..21387725 | 83..834 | 100 | <- | Minus |
| X | 21387786..21387851 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:34 Download gff for
BS29502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21256883..21257318 | 1264..1699 | 100 | <- | Minus |
| arm_X | 21257377..21257805 | 835..1263 | 100 | <- | Minus |
| arm_X | 21258001..21258752 | 83..834 | 100 | <- | Minus |
| arm_X | 21258813..21258878 | 17..82 | 100 | | Minus |
BS29502.pep Sequence
Translation from 16 to 1698
> BS29502.pep
MSQMTQKTVQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVV
VRARTGSGKTATYALPLIQKILNSKLNASEQYVSAVVLAPTKELCRQSRK
VIEQLVESCGKVVRVADIADSSNDTVTQRHALSESPDIVVATPANLLAYA
EAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHLPPIYQAVLVSAT
LTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAILYA
LLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHT
ISQFNKGTYDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQ
CVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKESKVNDSVEK
KLCDSFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIR
EIKIEILNCEKLKAFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVP
KALKRVVGTSSSPVGASEAKQPRQSAAKAAFERQVNDPLMASQVDFGKRR
PAHRRKKKAL*
BS29502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hlc-PB | 560 | CG1666-PB | 1..560 | 1..560 | 2825 | 100 | Plus |
| Hlc-PA | 560 | CG1666-PA | 1..560 | 1..560 | 2825 | 100 | Plus |
| CG9253-PA | 507 | CG9253-PA | 58..447 | 6..439 | 442 | 29.4 | Plus |
| Rs1-PB | 782 | CG2173-PB | 151..540 | 3..429 | 438 | 28.2 | Plus |
| Rs1-PA | 782 | CG2173-PA | 151..540 | 3..429 | 438 | 28.2 | Plus |
