BS29506.complete Sequence
605 bp assembled on 2012-05-25
GenBank Submission: KX801684
> BS29506.complete
GAAGTTATCAGTCGACATGCGTACCATTAATTCCAACCAGTGCGTGAAGA
TCCCTAAGGATATCAAGGCCTCGGTGAAGGCCCGTGTGGTGACCATCACC
GGCACCCGCGGCACCCTGAAGCGCAGCTTCAAGCACTTGGCTCTGGACAT
GTACATGCCCGACAAGCGCACCCTGAAGGTGGAGAAGTGGTTCGGAACCA
AGAAGGAGTTGGCCGCCGTCCGCACCGTCTGCAGTCACATCGAGAACATG
ATCAAGGGAGTCACGTTTGGATTCCAGTACAAGATGCGTGCTGTGTACGC
CCATTTCCCCATCAACTGTGTCACCTCCGAGAACAACACGGTCATTGAGA
TCCGTAACTTCTTGGGTGAGAAGTACATCCGTCGTGTGGAGATGGCTCCT
GGCGTCACCGTGGTCAACTCCACTGCCCAGAAGGACGAACTTATCGTGGA
GGGAAACGATATTGAGTCTGTCTCCGGATCTGCCGCCCTCATCCAGCAGT
CCACGACCGTCAAGAACAAGGATATCCGTAAGTTCCTTGACGGTCTGTAC
GTGTCCGAGAAGACGACCGTTGTGAAGCTAGAGTCTTAGAAGCTTTCTAG
ACCAT
BS29506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL9-RC | 573 | CG6141-PC | 1..573 | 17..589 | 2865 | 100 | Plus |
| RpL9-RB | 573 | CG6141-PB | 1..573 | 17..589 | 2865 | 100 | Plus |
| RpL9-RA | 573 | CG6141-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL9-RC | 807 | CG6141-RC | 86..659 | 17..590 | 2870 | 100 | Plus |
| RpL9-RB | 798 | CG6141-RB | 159..732 | 17..590 | 2870 | 100 | Plus |
| RpL9-RA | 761 | CG6141-RA | 122..695 | 17..590 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11002906..11003239 | 590..257 | 1670 | 100 | Minus |
| 2L | 23513712 | 2L | 11003510..11003751 | 258..17 | 1210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:28:37 has no hits.
BS29506.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:07 Download gff for
BS29506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL9-RB | 128..700 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:17 Download gff for
BS29506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL9-RA | 122..694 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:22 Download gff for
BS29506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL9-RA | 122..694 | 17..589 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:22 Download gff for
BS29506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11002907..11003238 | 258..589 | 100 | <- | Minus |
| 2L | 11003511..11003751 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:17 Download gff for
BS29506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11003511..11003751 | 17..257 | 100 | | Minus |
| arm_2L | 11002907..11003238 | 258..589 | 100 | <- | Minus |
BS29506.pep Sequence
Translation from 16 to 588
> BS29506.pep
MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDK
RTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPIN
CVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIE
SVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVKLES*
BS29506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL9-PC | 190 | CG6141-PC | 1..190 | 1..190 | 960 | 100 | Plus |
| RpL9-PB | 190 | CG6141-PB | 1..190 | 1..190 | 960 | 100 | Plus |
| RpL9-PA | 190 | CG6141-PA | 1..190 | 1..190 | 960 | 100 | Plus |
