BS29511.complete Sequence
1715 bp assembled on 2013-01-22
GenBank Submission: KX802216
> BS29511.complete
GAAGTTATCAGTCGACATGAGCGAGACCATAAACACCGCGGCTCAGTTCC
CGAGCTTCGAGAAGCCGACCGTGCAGTTCAATGAAAAGGGCTGGGGTCCC
TGCGAGCTGCCCGATACGTTCAAGGATGTGCCGTACCAGCCGTTCAGCAA
GAACGATCGTCTGGGCAAGATCTGCGACTGGACGAATACGTCGAACAACG
ACAAGAAGTACCAGAACAAGTATGCCTCCAGCTTTGGCACGGGCATTCAG
TACTCGTACTACCATGAGGAGGACGAGACAACCTTCCACCTGGTGGACAC
GGCCCGCGTCCAGAAGCCGCCGCACCAGCGCGGCCGGTTCCGCAACATGA
GGAATTCGCGTTCCGGTCGTGGCAGGAATGCCCGCGGTGGCCTTAATACT
CACGGCATGACGACGCTCAGCGGCAAGAATGTAAAGGCCCGCGATCCGCG
CCATGGTCGCGGCATGGGCAAGAAGTTCGGTCATCGCGGACCACCACCAA
AGATGCGCGAATCTTCGGTGGCCGTCCGCGCCGATTGGGCATCCATCGAG
GAGATGGACTTCCCGCGACTCATCAAGCTGTCGCTGCCCAACATCAAGGA
GGGCGTCGATATTGTCACCTGCGGCACGTTGGAGTACTACGACAAGACCT
ACGACCGCATCAATGTGAAGAACGAGAAGCCGCTGCAGAAGATCGATCGC
ATCGTGCATACGGTGACCACCACAGACGATCCCGTCATCCGGCGTTTGTC
TAAGACCGTCGGCAATGTCTTCGCCACGGACGCCATCCTGGCCACCATCA
TGTGCTCTACGCGATCGAACTATTCCTGGGATATTGTCATCGAGAAAGTT
GGCGACAAGGTGTTCATGGACAAGCGTGACCACACCGAGTTCGATCTGTT
GACCGTGAACGAGAGCAGCGTGGAACCACCGACCGACGACGACAGCTCAT
GCAACTCCCCTCGCAACCTGGCCATCGAGGCGACTTTCATTAACCACAAC
TTTAGCCAGCAGGTGCTTAAGACTGGAGACCAGGAACCCAAATACAAGTT
CGAGGAAAGCAACCCTTTCATCAGCGAGGACGAAGATATCCAAGTCGCCA
GCGTGGGCTACCGCTACAAGAAGTGGGAGCTGGGAAGCGATATTGTCCTG
GTAGCGCGTTGCGAGCACGATGGTGTCCTGCAGACGCCAAGCGGCGAGCC
GCAGTTCATGACTATCAAGGCACTCAACGAGTGGGACTCGAAGTTGGCCA
ATGGCGTGGAATGGCGTCAAAAGTTGGACACGCAGCGCGGTGCTGTGCTC
GCCAACGAGCTGAGGAACAACGCATGCAAGCTGGCCAAGTGGACTGTGCA
GGCCGTCCTGGCCGGGTCCGATCAGCTAAAGCTCGGCTATGTGTCGCGTA
TCAATCCGAGAGATCACTCGCGTCACGTCATCCTCGGCACGCAGCAGTTC
AAGCCGCATGAATTTGCCACTCAGATCAACCTGAGCATGGACAACGCCTG
GGGAATCCTGAGATGCATCATCGATCTGGTGATGAAGCAGAAGGATGGCA
AATACCTGATCATGAAGGACCCCAACAAGCCGATCATCCGTCTGTACGAC
ATCCCAGACAATACTTTCGACTCCGATGACTCGGACGATGGCGAGGGCGA
TGACGAAGGTTTCCAGCAGGTCTACAACTACGCGCACAACAAGATTTAGA
AGCTTTCTAGACCAT
BS29511.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p66-RB | 1683 | CG10161-PB | 1..1683 | 17..1699 | 8415 | 100 | Plus |
| CG4810-RA | 1656 | CG4810-PA | 514..1601 | 533..1626 | 815 | 71.8 | Plus |
| CG4810-RA | 1656 | CG4810-PA | 81..140 | 124..183 | 210 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:11:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p66-RB | 2012 | CG10161-RB | 149..1836 | 13..1700 | 8425 | 99.9 | Plus |
| CG4810-RA | 2232 | CG4810-RA | 573..1660 | 533..1626 | 815 | 71.8 | Plus |
| CG4810-RA | 2232 | CG4810-RA | 140..199 | 124..183 | 210 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23680512..23681148 | 216..852 | 3185 | 100 | Plus |
| 3R | 32079331 | 3R | 23681586..23682141 | 1145..1700 | 2780 | 100 | Plus |
| 3R | 32079331 | 3R | 23681216..23681511 | 851..1146 | 1480 | 100 | Plus |
| 3R | 32079331 | 3R | 23680187..23680389 | 13..215 | 1000 | 99.5 | Plus |
| 3R | 32079331 | 3R | 12193275..12193700 | 1626..1201 | 750 | 78.4 | Minus |
| 3R | 32079331 | 3R | 12194107..12194439 | 865..533 | 270 | 72.1 | Minus |
| 3R | 32079331 | 3R | 12194813..12194872 | 183..124 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:11:22 has no hits.
BS29511.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:52 Download gff for
BS29511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p66-RB | 147..1829 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:49 Download gff for
BS29511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p66-RB | 153..1835 | 17..1699 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:56 Download gff for
BS29511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p66-RB | 153..1835 | 17..1699 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:56 Download gff for
BS29511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23681217..23681509 | 852..1144 | 100 | -> | Plus |
| 3R | 23680191..23680389 | 17..215 | 100 | -> | Plus |
| 3R | 23680512..23681147 | 216..851 | 100 | -> | Plus |
| 3R | 23681586..23682140 | 1145..1699 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:49 Download gff for
BS29511.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19505913..19506111 | 17..215 | 100 | -> | Plus |
| arm_3R | 19506234..19506869 | 216..851 | 100 | -> | Plus |
| arm_3R | 19506939..19507231 | 852..1144 | 100 | -> | Plus |
| arm_3R | 19507308..19507862 | 1145..1699 | 100 | | Plus |
BS29511.pep Sequence
Translation from 16 to 1698
> BS29511.pep
MSETINTAAQFPSFEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLG
KICDWTNTSNNDKKYQNKYASSFGTGIQYSYYHEEDETTFHLVDTARVQK
PPHQRGRFRNMRNSRSGRGRNARGGLNTHGMTTLSGKNVKARDPRHGRGM
GKKFGHRGPPPKMRESSVAVRADWASIEEMDFPRLIKLSLPNIKEGVDIV
TCGTLEYYDKTYDRINVKNEKPLQKIDRIVHTVTTTDDPVIRRLSKTVGN
VFATDAILATIMCSTRSNYSWDIVIEKVGDKVFMDKRDHTEFDLLTVNES
SVEPPTDDDSSCNSPRNLAIEATFINHNFSQQVLKTGDQEPKYKFEESNP
FISEDEDIQVASVGYRYKKWELGSDIVLVARCEHDGVLQTPSGEPQFMTI
KALNEWDSKLANGVEWRQKLDTQRGAVLANELRNNACKLAKWTVQAVLAG
SDQLKLGYVSRINPRDHSRHVILGTQQFKPHEFATQINLSMDNAWGILRC
IIDLVMKQKDGKYLIMKDPNKPIIRLYDIPDNTFDSDDSDDGEGDDEGFQ
QVYNYAHNKI*
BS29511.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p66-PB | 560 | CG10161-PB | 1..560 | 1..560 | 2997 | 100 | Plus |
| CG4810-PA | 551 | CG4810-PA | 2..543 | 9..546 | 1969 | 66.4 | Plus |
