BS29514.complete Sequence
1553 bp assembled on 2012-10-18
GenBank Submission: KX801545
> BS29514.complete
GAAGTTATCAGTCGACATGTTTGTTCTAATATACCTGTTGATCGCGATCT
CCTCGCTTTTGGCCTACTTGTACCACCGCAACTTCAACTACTGGAATCGC
CGCGGCGTGCCACACGATGCTCCTCACCCACTGTATGGCAACATGGTCGG
GTTCCGGAAGAACCGGGTGATGCACGACTTCTTCTACGACTACTACAACA
AGTACCGGAAGAGCGGCTTTCCCTTCGTGGGCTTTTACTTTCTGCACAAG
CCGGCCGCCTTCATCGTGGACACCCAGCTGGCCAAGAACATCCTGATCAA
GGATTTCTCGAACTTTGCCGATCGTGGCCAGTTTCACAACGGGCGCGACG
ACCCGCTCACGCAGCACCTGTTCAACCTGGACGGAAAGAAGTGGAAGGAC
ATGCGCCAGAGGCTGACGCCGACTTTCACCTCGGGCAAGATGAAGTTCAT
GTTCCCGACGGTGATCAAGGTGTCTGAGGAGTTCGTCAAGGTGATCACGG
AGCAGGTGCCCGCCGCCCAGAACGGCGCTGTGCTCGAGATCAAGGAGCTG
ATGGCCAGGTTCACCACCGATGTGATTGGCACCTGTGCCTTCGGCATTGA
GTGTAACACGCTGCGCACCCCTGTCAGTGATTTCCGCACCATGGGACAGA
AGGTGTTCACCGATATGCGCCACGGGAAACTGCTGACCATGTTCGTGTTC
AGCTTTCCCAAGCTGGCCAGCAGGTTGAGAATGCGCATGATGCCCGAGGA
CGTCCACCAGTTCTTCATGCGCCTGGTCAACGACACGATTGCCCTCAGGG
AGCGGGAGAACTTCAAGAGGAACGACTTCATGAACCTGCTGATTGAACTG
AAGCAGAAGGGGCGCGTCACCCTGGACAACGGAGAGGTGATCGAGGGCAT
GGACATCGGCGAACTGGCCGCCCAGGTGTTCGTCTTTTATGTGGCCGGAT
TTGAGACCTCCTCCTCGACAATGAGTTACTGCCTGTATGAGTTGGCTCAG
AATCAGGACATTCAGGACAGGCTGCGCAACGAGATCCAAACGGTGCTGGA
GGAACAGGAGGGGCAGCTAACGTACGAATCCATCAAAGCCATGACCTACT
TGAACCAGGTCATCTCAGAAACCCTGAGGCTCTACACACTGGTGCCCCAC
CTCGAACGGAAGGCCCTCAACGACTACGTGGTGCCGGGCCATGAAAAGCT
TGTGATTGAGAAGGGCACACAGGTCATAATCCCCGCTTGCGCCTACCACC
GCGACGAGGATCTTTATCCGAATCCGGAGACCTTTGATCCGGAGCGCTTC
TCGCCGGAGAAAGTGGCCGCCCGGGAGTCCGTGGAGTGGCTGCCCTTCGG
CGACGGGCCGCGGAACTGCATCGGGATGCGGTTTGGACAAATGCAGGCTC
GCATCGGTTTGGCTCAGATCATCAGCCGGTTCAGGGTATCCGTCTGCGAT
ACGACAGAGATCCCACTGAAGTATAGTCCCATGTCCATAGTTTTGGGCAC
CGTTGGGGGCATCTACTTGCGAGTGGAACGCATCTAAAAGCTTTCTAGAC
CAT
BS29514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a2-RA | 1521 | CG9438-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
| Cyp6a21-RA | 1515 | CG10247-PA | 1225..1393 | 1247..1415 | 260 | 76.9 | Plus |
| Cyp6a9-RB | 1515 | CG10246-PB | 1225..1376 | 1247..1398 | 250 | 77.6 | Plus |
| Cyp6a21-RA | 1515 | CG10247-PA | 525..584 | 544..603 | 195 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a2-RA | 1674 | CG9438-RA | 60..1580 | 17..1537 | 7605 | 100 | Plus |
| Cyp6a21-RA | 1631 | CG10247-RA | 1307..1475 | 1247..1415 | 260 | 76.9 | Plus |
| Cyp6a9-RB | 1964 | CG10246-RB | 1271..1422 | 1247..1398 | 250 | 77.6 | Plus |
| Cyp6a21-RA | 1631 | CG10247-RA | 607..666 | 544..603 | 195 | 88.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6780331..6781432 | 1118..17 | 5510 | 100 | Minus |
| 2R | 25286936 | 2R | 6779843..6780265 | 1537..1115 | 2115 | 100 | Minus |
| 2R | 25286936 | 2R | 14885420..14885588 | 1415..1247 | 260 | 76.9 | Minus |
| 2R | 25286936 | 2R | 14879898..14880049 | 1398..1247 | 250 | 77.6 | Minus |
| 2R | 25286936 | 2R | 14886282..14886341 | 603..544 | 195 | 88.3 | Minus |
| 2R | 25286936 | 2R | 8571047..8571099 | 554..606 | 190 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:53:47 has no hits.
BS29514.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:06 Download gff for
BS29514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a2-RA | 30..1542 | 23..1535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:13 Download gff for
BS29514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a2-RA | 66..1578 | 23..1535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:17 Download gff for
BS29514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6a2-RA | 66..1578 | 23..1535 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:17 Download gff for
BS29514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6779845..6780261 | 1119..1535 | 100 | <- | Minus |
| 2R | 6780331..6781426 | 23..1118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:13 Download gff for
BS29514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2667350..2667766 | 1119..1535 | 100 | <- | Minus |
| arm_2R | 2667836..2668931 | 23..1118 | 100 | | Minus |
BS29514.pep Sequence
Translation from 16 to 1536
> BS29514.pep
MFVLIYLLIAISSLLAYLYHRNFNYWNRRGVPHDAPHPLYGNMVGFRKNR
VMHDFFYDYYNKYRKSGFPFVGFYFLHKPAAFIVDTQLAKNILIKDFSNF
ADRGQFHNGRDDPLTQHLFNLDGKKWKDMRQRLTPTFTSGKMKFMFPTVI
KVSEEFVKVITEQVPAAQNGAVLEIKELMARFTTDVIGTCAFGIECNTLR
TPVSDFRTMGQKVFTDMRHGKLLTMFVFSFPKLASRLRMRMMPEDVHQFF
MRLVNDTIALRERENFKRNDFMNLLIELKQKGRVTLDNGEVIEGMDIGEL
AAQVFVFYVAGFETSSSTMSYCLYELAQNQDIQDRLRNEIQTVLEEQEGQ
LTYESIKAMTYLNQVISETLRLYTLVPHLERKALNDYVVPGHEKLVIEKG
TQVIIPACAYHRDEDLYPNPETFDPERFSPEKVAARESVEWLPFGDGPRN
CIGMRFGQMQARIGLAQIISRFRVSVCDTTEIPLKYSPMSIVLGTVGGIY
LRVERI*
BS29514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6a2-PA | 506 | CG9438-PA | 1..506 | 1..506 | 2652 | 100 | Plus |
| Cyp6a8-PA | 506 | CG10248-PA | 5..506 | 2..506 | 1502 | 54.5 | Plus |
| Cyp6a18-PB | 507 | CG13977-PB | 5..507 | 2..506 | 1479 | 53.4 | Plus |
| Cyp6a18-PA | 507 | CG13977-PA | 5..507 | 2..506 | 1479 | 53.4 | Plus |
| Cyp6a21-PA | 504 | CG10247-PA | 6..504 | 3..506 | 1448 | 54.8 | Plus |
