BS29515.complete Sequence
1439 bp assembled on 2012-05-25
GenBank Submission: KX805314
> BS29515.complete
GAAGTTATCAGTCGACATGCCCGTTGATCCCATGGATGACATCGAACTGC
GCTCCGTGCAGCTGCAATTCCCCAATGCCCGCGGCTCCATCCTGGAGGCC
TGCGAACAGCGACGCGTGCCCACAGACAAGGGCGATGTCCACGTGGCCAT
ACAGGGCGATACGGCCAAGCCGGCCATTATCACCTACCACGATTTGGGCC
TCAACTACGCCACCAGCTTTGCTGGCTTCTTCAATTTTCCAGTGATGCGA
GGTCTGCTGGAGAACTTCTGTGTTTACCACGTGACTGCTCCTGGCCAGGA
GGAGGGTGCACCCACTTTGCCAGAGGATTACGTCTATCCGACCATGGATG
ATCTGGCCGCCCAGCTGCTTTTCGTGCTATCCCACTTTGGCCTAAAGTCG
GTGATTGGTTTCGGCGTTGGTGCCGGGGCGAATATTCTGGCCCGTTTCGC
TCACGCCCATCCGGACAAGGTGGGCGCCCTGTGCCTGATCAATTGCGTGT
CCACGCAGTCGGGCTGGATCGAGTGGGGCTACCAGAGCTTCAATGCCCGC
TTCTTGCGCACCAAGGGCATGACACAGGGCGTGATCGATTATCTGATGTG
GCACCACTTCGGACGCAATCCGGAGGAGCGCAATCACGACCTGGTGCAGA
TGTACAAGCAGCACTTCGAGCGTGGCGTTAATCCGACCAATCTTGCCATG
CTGATCAACGCGTACATCCATCGTAACGACCTGCATCTGGCACGCACTCC
GCCAGGTACTCCGGGCAGCGAAACGGCGGCCACCACGCTGAAGATGCCGG
TGATCAATATCACAGGTTCGCTCTCGCCGCACGTCGACGACACGGTGACC
TTCAATGGCCGTCTAGATCCTACAAACTCATCGTGGATGAAGATTTCCGA
TTGCGCTTTGGTGCTGGAGGAGCAGCCGGCTAAGCTGGCCGAGGCCTTCC
GGCTCTTCTTGCAGGGCGAGGGCTACGCAACGCCGCTGTCCACGCCAGCG
AGTTCGCCCTGTGGAACTAAATACCACACCTACTCCTCCATCTTCTTTGC
CAACTTCCGGGAGCAGCAGCAGCAGGCGATGGAGGAGCGCGATCGTGAGC
GGGAAAGGGAGCGGGATCGCCAGCGGCAGCTGAGCCTTCGCGTTGGCAAT
CGCCTTCGGGAGACGGCCATCAATTGCACCAGCAGCAACTCCAACACCAC
CGCCGGCCAGGGGGACAATAATAATGCGGATGGTCGCAGCGTCGACGGGG
ACGACCAGGATCTGGAGAACGGAAACGGATGTGCCGGCGGCAACGGAACA
GGAACCGGTAATGGCAACCGAGCCTACGTGACCACGGACACATCGGGCAC
GCTTTACTACGGCACCCAGAGCAACAAGATACGCATCACAGAGAACCCAC
TGCCCGAGCCGGTCAGCTCTTAGAAGCTTTCTAGACCAT
BS29515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RI | 1458 | CG15669-PI | 51..1458 | 16..1423 | 7040 | 100 | Plus |
| MESK2-RJ | 1407 | CG15669-PJ | 1..1407 | 17..1423 | 7035 | 100 | Plus |
| MESK2-RE | 1344 | CG15669-PE | 297..1259 | 16..978 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-RI | 2798 | CG15669-RI | 483..1891 | 16..1424 | 7045 | 100 | Plus |
| MESK2-RJ | 2702 | CG15669-RJ | 387..1795 | 16..1424 | 7045 | 100 | Plus |
| MESK2-RE | 2619 | CG15669-RE | 872..1834 | 16..978 | 4815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21511404..21511968 | 328..892 | 2825 | 100 | Plus |
| 2R | 25286936 | 2R | 21515887..21516334 | 977..1424 | 2240 | 100 | Plus |
| 2R | 25286936 | 2R | 21510870..21511060 | 16..206 | 955 | 100 | Plus |
| 2R | 25286936 | 2R | 21511123..21511243 | 207..327 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 21512091..21512177 | 891..977 | 435 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2493..2532 | 1168..1207 | 128 | 80 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6570..6627 | 1150..1207 | 119 | 67.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 8026..8083 | 1150..1207 | 119 | 67.2 | Plus |
BS29515.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:09 Download gff for
BS29515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RD | 483..1445 | 17..977 | 99 | -> | Plus |
| MESK2-RD | 3123..3568 | 978..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:21 Download gff for
BS29515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RJ | 388..1794 | 17..1423 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:27 Download gff for
BS29515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MESK2-RJ | 388..1794 | 17..1423 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:27 Download gff for
BS29515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21510871..21511060 | 17..206 | 100 | -> | Plus |
| 2R | 21511123..21511243 | 207..327 | 100 | -> | Plus |
| 2R | 21511404..21511968 | 328..892 | 100 | -> | Plus |
| 2R | 21512093..21512177 | 893..977 | 100 | -> | Plus |
| 2R | 21515888..21516333 | 978..1423 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:21 Download gff for
BS29515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17398376..17398565 | 17..206 | 100 | -> | Plus |
| arm_2R | 17398628..17398748 | 207..327 | 100 | -> | Plus |
| arm_2R | 17398909..17399473 | 328..892 | 100 | -> | Plus |
| arm_2R | 17399598..17399682 | 893..977 | 100 | -> | Plus |
| arm_2R | 17403393..17403838 | 978..1423 | 100 | | Plus |
BS29515.pep Sequence
Translation from 16 to 1422
> BS29515.pep
MPVDPMDDIELRSVQLQFPNARGSILEACEQRRVPTDKGDVHVAIQGDTA
KPAIITYHDLGLNYATSFAGFFNFPVMRGLLENFCVYHVTAPGQEEGAPT
LPEDYVYPTMDDLAAQLLFVLSHFGLKSVIGFGVGAGANILARFAHAHPD
KVGALCLINCVSTQSGWIEWGYQSFNARFLRTKGMTQGVIDYLMWHHFGR
NPEERNHDLVQMYKQHFERGVNPTNLAMLINAYIHRNDLHLARTPPGTPG
SETAATTLKMPVINITGSLSPHVDDTVTFNGRLDPTNSSWMKISDCALVL
EEQPAKLAEAFRLFLQGEGYATPLSTPASSPCGTKYHTYSSIFFANFREQ
QQQAMEERDRERERERDRQRQLSLRVGNRLRETAINCTSSNSNTTAGQGD
NNNADGRSVDGDDQDLENGNGCAGGNGTGTGNGNRAYVTTDTSGTLYYGT
QSNKIRITENPLPEPVSS*
BS29515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MESK2-PI | 485 | CG15669-PI | 18..485 | 1..468 | 2494 | 100 | Plus |
| MESK2-PJ | 468 | CG15669-PJ | 1..468 | 1..468 | 2494 | 100 | Plus |
| MESK2-PD | 365 | CG15669-PD | 18..338 | 1..321 | 1716 | 100 | Plus |
| MESK2-PE | 447 | CG15669-PE | 100..420 | 1..321 | 1716 | 100 | Plus |
| MESK2-PF | 447 | CG15669-PF | 100..420 | 1..321 | 1716 | 100 | Plus |
