BS29520.complete Sequence
980 bp assembled on 2012-05-25
GenBank Submission: KX802019
> BS29520.complete
GAAGTTATCAGTCGACATGATTGAAGTCGACGATCAAATAACGAAGCCCC
TGAACTTGGCCAACTCGGCCGTTCTGCGCGCCGTCGAAGAGGAAGAACAA
CAAGCCAAATGTGGCTACAAGCGTGTGGCCTGGCCACCGGCCTCCGAGGA
GCGGATCATCCGGGAGTTCACCCCCCAGCCGCAGACTCAGAGTCCGGCTC
CCGGTGCCGGAGGCTACTATCCGCAGGCCCACGCTCCCACAGCAGCAGCT
GCCGCTCCACCTCAGCAGCAGTACGGTGCTCCGTCTTACGATGGCCAGCA
GCCTGGAGCACAGTGGCAACAGCAACAGCAGCAGCAGCAGGTTCCGCAGC
AGCAGTATCAGCCTCAATCGCAGGCTCAGGCGCCCTATCAGCCACCACAG
TGGAACCAGCCGCAGCAGCAGCAGCAGCAGCCATCGTACCAGGCTTCACC
GTACCAACAGCAGCAACAGCAACAGCCATCCTATTACCCACAGCAAAATG
GTGGCTCGACCTATGCTCAACCCCCATACAATTCTTATTCGCAGCCCCAG
TTGCCCTACTCGCAGGATCAGACTGATCTGCAGCAGCAGCAACAACAGCA
GCAGCAGCAGTATCCGGGAGCCTACGCTGGCCAGGATAGCTACCGGGGCG
CCAGTCCCGGCATCATCACCCTGCGCAAGGAGGCTCCAGTCAGCCAGAAG
CCTGCACCAGTCTACACTTCGCAGCCAGCCGCCGTCAGTTATCAGGGAGG
CAGCAAATTGCGCGGAGATTTGAAATGGCCACCACCGGAGTACAAGGAGG
CCGCGGCTCGCGAGAACGAGGAACGACGCCAGTTGGCGTTGGGTCCCGTC
TGCCGTCCCAGGAGAGTTAACCGGGACTACACACCCTTCTTTGCCAAGCA
CCAGTTGAACAATGGCTATCCCAGCTACAAGGTGCCTCCGGGCACCCAGC
ACATTTTCGGCTAAAAGCTTTCTAGACCAT
BS29520.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RE | 948 | CG43897-PE | 1..948 | 17..964 | 4740 | 100 | Plus |
| CG43897-RG | 1065 | CG43897-PG | 120..1065 | 19..964 | 4730 | 100 | Plus |
| CG43897-RF | 1065 | CG43897-PF | 120..1065 | 19..964 | 4730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RE | 2515 | CG43897-RE | 240..1187 | 17..964 | 4740 | 100 | Plus |
| CG43897-RG | 3056 | CG43897-RG | 783..1728 | 19..964 | 4730 | 100 | Plus |
| CG43897-RF | 2799 | CG43897-RF | 526..1471 | 19..964 | 4730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832196..9832680 | 263..747 | 2425 | 100 | Plus |
| 3L | 28110227 | 3L | 9830633..9830785 | 113..265 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832867 | 746..875 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 9824546..9824641 | 19..114 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 9832927..9833017 | 874..964 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:28:59 has no hits.
BS29520.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:12 Download gff for
BS29520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RC | 773..1022 | 17..265 | 98 | -> | Plus |
| CG33205-RC | 1463..2159 | 266..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:28 Download gff for
BS29520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RE | 240..1185 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:32 Download gff for
BS29520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RE | 240..1185 | 17..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:32 Download gff for
BS29520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9832739..9832866 | 747..874 | 100 | -> | Plus |
| 3L | 9832928..9833015 | 875..962 | 100 | | Plus |
| 3L | 9824544..9824640 | 17..113 | 98 | -> | Plus |
| 3L | 9830634..9830785 | 114..265 | 100 | -> | Plus |
| 3L | 9832199..9832679 | 266..746 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:28 Download gff for
BS29520.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9817644..9817740 | 17..113 | 98 | -> | Plus |
| arm_3L | 9823734..9823885 | 114..265 | 100 | -> | Plus |
| arm_3L | 9825299..9825779 | 266..746 | 100 | -> | Plus |
| arm_3L | 9825839..9825966 | 747..874 | 100 | -> | Plus |
| arm_3L | 9826028..9826115 | 875..962 | 100 | | Plus |
BS29520.pep Sequence
Translation from 16 to 963
> BS29520.pep
MIEVDDQITKPLNLANSAVLRAVEEEEQQAKCGYKRVAWPPASEERIIRE
FTPQPQTQSPAPGAGGYYPQAHAPTAAAAAPPQQQYGAPSYDGQQPGAQW
QQQQQQQQVPQQQYQPQSQAQAPYQPPQWNQPQQQQQQPSYQASPYQQQQ
QQQPSYYPQQNGGSTYAQPPYNSYSQPQLPYSQDQTDLQQQQQQQQQQYP
GAYAGQDSYRGASPGIITLRKEAPVSQKPAPVYTSQPAAVSYQGGSKLRG
DLKWPPPEYKEAAARENEERRQLALGPVCRPRRVNRDYTPFFAKHQLNNG
YPSYKVPPGTQHIFG*
BS29520.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-PE | 315 | CG43897-PE | 1..315 | 1..315 | 1708 | 100 | Plus |
| CG43897-PG | 354 | CG43897-PG | 41..354 | 2..315 | 1703 | 100 | Plus |
| CG43897-PF | 354 | CG43897-PF | 41..354 | 2..315 | 1703 | 100 | Plus |
| CG43897-PH | 355 | CG43897-PH | 41..355 | 2..315 | 1691 | 99.7 | Plus |
| CG43897-PQ | 299 | CG43897-PQ | 17..299 | 33..315 | 1551 | 100 | Plus |
