BS29523.complete Sequence
1259 bp assembled on 2012-10-29
GenBank Submission: KX800623
> BS29523.complete
GAAGTTATCAGTCGACATGCATCGCACGCAGGACGAGCTGGACGACGTGA
TGATGTCCTCGATGACATCGTCGGCGGTGGTCATGCGTTCCACAGCCACT
GGCGCACGTCTACTGAGGCCAAGAAATCAGACGCCCGTGGGCAGATCCGG
CAGCGGAACACGCCACTCCACGGGCATGTATTTTACGGAGGTGGATGTGA
CCGCCAAGAATGCCGGCGATTTCAACTACAACATTCGCAGCCAGGATGAC
ATCAGCTCTGGCTACTCGAGCGCCGAACCTGTGAGTGGTCTCAGTCGCAC
CTCCTCCATGACAAACGCTTCCAAGGCTCGAGCCAAGTCCAAACGCAATG
AGTTGCTGGAAGAGATGAGAGACGAGGTCTACTTAGACAACCAGCTGTAT
TTTCAAGGTGTGCAAAGGAAGAGCTCAGTTCCAGAAGCTGAAGAACTGAA
AATAGTGGAGAGTTCTGAAAGCATCCAATCTCAGGAGTTGGAAAAGGTGC
TGAAGGAGGAGAACATTGATGCAGAAGATGAGGCCTTTTTTGAAACCTTG
CCTTTGATAGAGGAGCACATAAATGAAGTGGTGGCTAACTATGGAAGGGA
TGAAAAGTTGTTGCCCCAAGAGCGGAAGCATAATTCGATAGAAGAGGAGC
AGTTTGAAGATGCATTGTTTGAGGAACCACAGAAATGTGTCTCAGATGAA
GTGGATGCTAAAAATATTGAGGAGATACTAACGGATAGAAGTCAAAACCA
GACTCCGAATGGATCTGCTGAAACTACTGATTCAGGAACACCTTCCCAAA
ACAAGCCCTATGTCCATCCACCGATAGACCCATTTTTGCTGGTTCTAAGC
GCTTCTGCATCTGCTCCGGATCCCTTTATGCCCGAACGGCCGCGTCCAAT
GTCGCCGCGTGAAATGCGCGAGACTCTGGAGGAGATTAAGCACAGTTTCC
GTGCCCAACTGGAAGCAGAGCCCTCCGTATCAGCCTCACCATCACCCTCC
TTGCGGCCCAAGGCCAACCATGGCAAGGGACGAGCTCCACCACCGCCCTT
GCCACCCAAGAAGCACTCATTGAGTCCCCAACCGGACGCCATCAGCCAGA
CATCGACGGGCAGCGTGGAACGCAAGTCAGGTATCGGACAACTGTTCAAG
AATATCAAAGCTAATGTGCTGCGTAACAAAGCTAATCCCAGCCAGCAGCA
GCCCGAGGATGAGCAGCTGGCGGCCAAAGAGACACAGATTTGAAAGCTTT
CTAGACCAT
BS29523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42678-RK | 1227 | CG42678-PK | 1..1227 | 17..1243 | 6135 | 100 | Plus |
| CG42678-RI | 2151 | CG42678-PI | 925..2151 | 17..1243 | 6135 | 100 | Plus |
| CG42678-RH | 1710 | CG42678-PH | 484..1710 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:58:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42678-RK | 1931 | CG42678-RK | 174..1401 | 17..1244 | 6140 | 100 | Plus |
| CG42678-RI | 2755 | CG42678-RI | 998..2225 | 17..1244 | 6140 | 100 | Plus |
| CG42678-RH | 2715 | CG42678-RH | 958..2185 | 17..1244 | 6140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22930387..22931280 | 351..1244 | 4470 | 100 | Plus |
| 2R | 25286936 | 2R | 22929865..22930073 | 17..225 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 22930186..22930319 | 219..352 | 655 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:58:41 has no hits.
BS29523.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-29 16:13:52 Download gff for
BS29523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RK | 174..1399 | 17..1242 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:06 Download gff for
BS29523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RH | 958..2183 | 17..1242 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:28 Download gff for
BS29523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42678-RH | 958..2183 | 17..1242 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:28 Download gff for
BS29523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22930193..22930319 | 226..352 | 100 | -> | Plus |
| 2R | 22929865..22930073 | 17..225 | 100 | -> | Plus |
| 2R | 22930389..22931278 | 353..1242 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:06 Download gff for
BS29523.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18817388..18817596 | 17..225 | 100 | -> | Plus |
| arm_2R | 18817716..18817842 | 226..352 | 100 | -> | Plus |
| arm_2R | 18817912..18818801 | 353..1242 | 100 | | Plus |
BS29523.pep Sequence
Translation from 16 to 1242
> BS29523.pep
MHRTQDELDDVMMSSMTSSAVVMRSTATGARLLRPRNQTPVGRSGSGTRH
STGMYFTEVDVTAKNAGDFNYNIRSQDDISSGYSSAEPVSGLSRTSSMTN
ASKARAKSKRNELLEEMRDEVYLDNQLYFQGVQRKSSVPEAEELKIVESS
ESIQSQELEKVLKEENIDAEDEAFFETLPLIEEHINEVVANYGRDEKLLP
QERKHNSIEEEQFEDALFEEPQKCVSDEVDAKNIEEILTDRSQNQTPNGS
AETTDSGTPSQNKPYVHPPIDPFLLVLSASASAPDPFMPERPRPMSPREM
RETLEEIKHSFRAQLEAEPSVSASPSPSLRPKANHGKGRAPPPPLPPKKH
SLSPQPDAISQTSTGSVERKSGIGQLFKNIKANVLRNKANPSQQQPEDEQ
LAAKETQI*
BS29523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42678-PK | 408 | CG42678-PK | 1..408 | 1..408 | 2075 | 100 | Plus |
| CG42678-PH | 569 | CG42678-PH | 162..569 | 1..408 | 2075 | 100 | Plus |
| CG42678-PI | 716 | CG42678-PI | 309..716 | 1..408 | 2075 | 100 | Plus |
| CG42678-PJ | 570 | CG42678-PJ | 162..570 | 1..408 | 2063 | 99.8 | Plus |
| CG42678-PP | 538 | CG42678-PP | 162..533 | 1..372 | 1896 | 100 | Plus |
