BS29527.complete Sequence
1694 bp assembled on 2012-10-18
GenBank Submission: KX804823
> BS29527.complete
GAAGTTATCAGTCGACATGGCTGAGAATGAACCGCTGAACGACCTGCAGA
GCCAGGTGAATGGTCGTATCCTGCCCGCCGCCAATGGACATACAGCATCC
GCGACCAACGGATTGGTGCATGCGAATGGCAAGGATGCAATGAAGCCGTC
AGCTCCCGTTCAGAATGGGAATGGCAACGCGAACGGGACACACATCGAGG
CGCCCTGCTGTCGGGACATACACGGCAAGGAGCCACCGGACGGAGGAGCA
CGCGCCTGGCTGGTCATGGTGAGCGCCTTCCTTTGCAACGGCATCATCTT
TGGGTTCATCAACACCTACGGCGTTATCCATTCGCTGCTGACGGATAGGC
TTACGAAGCTCGGCGATCCGGAGGCGTCCAGCAAAGCGGCTCTGATTGGC
GCCCTGGCCATCGGCACCACATTCCTCTTCTCCACAATGGCTGGCTGTCT
GACGGACAAGATTGGCCTGCGGCTGACCACGTTCGCCGGCGGAGTCCTCT
CCGCGGGAGGACTGCTGCTGTCCTCGTTTTGCACGGAGAACATCGGCGCC
CTGTACTTCACCTACGGGATCATGTTCGGCCTGGGTGCCGCCCTTGCCTA
CACGCCCACATTGGCCATCCTGGGCCACTATTTCAAGCGGTACCTGGGAA
AGGTGAGTGGCTTTGTGACCGCCGGCTCCAGCGTTTTCACTGTGATACTG
CCGCCCTGTCTGGACAAGCTGCTCGGTAGCTATGGTCTGGAGGGGACCCT
GCGGATAATGAGCCTCGTTTCCGCCTTTATTATCCTTTGCTCCTTCGTGT
ACAAGCCACTGCATCCGCCACCGGAGCCGCCGAAGAAGAAGCCCGGCAGA
TCGCGCATCAATCTCTTCCTACGCTCGATCATCAACGTGGAGATCTGGAA
GCGTAAACGCTTCGTCATCTGGGCACTTTGTGTGCCGCTCGCCTTGTTCG
GCTACTTTGTGCCCTATGTGCACATGATGCAGTTCGTGAAAACCACTTTT
CCGGGAGAGGATGTCAACCTGCCGGTCATGTGTATCGGCATCACCTCCGG
CATCGGGCGTCTGATTTTCGGAGTCATTGCCGATATGCCGGGTGTGAACC
GTATGTACCTGCAACAATTGTCCTTGGTGTCCATTGGCCTGGTTACCTTG
CTGCTGCCGCTCACCAACTCGTACGTCATCCTCGTCTCGTTCACCCTGGT
CATGGGTCTTTTCGACGGCTGCTTCATTTCGCTGCTGGGCCCAATAGCCT
ACGAGATCTGTGGCCCCTCGGGCGCCACACAGGCCATCGGCTTTCTGCTA
GGACTCAGTTCTATTCCGCTCACAGTGGGTCCACCAGTGGCGGGCATGAT
CTTCGACAGCACGAACTCCTACACATTGCCGCTGATCCTCGCCGGACTCC
CCCCACTACTTGGCTCCTCGCTCTTGTTCCTCATCAAGTGCGTCAAGGAG
GAGGAGAACGGGGTCAGTGCGCCGCGAGCGGTGGTACTGGCCAATGGAGA
CATCGAGATTGCCGGCAACGGCCATTATCGGTCGGCTGGCACCAAGTCCA
GTGCACCGCTGATGGGTGCCACGAATGGTATCAATGGAAGCGCACCAGCG
TCCCCAACTATCCAGAGCAATGGACACGTGGACAACGGAACTGGGAAACT
CGCCGTGACCAACGGATCGGCGTCGTAGAAGCTTTCTAGACCAT
BS29527.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kar-RA | 1662 | CG12286-PA | 1..1662 | 17..1678 | 8310 | 100 | Plus |
| kar-RB | 1839 | CG12286-PB | 1..1628 | 17..1644 | 8140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kar-RA | 2176 | CG12286-RA | 192..1854 | 16..1678 | 8315 | 100 | Plus |
| kar-RB | 2321 | CG12286-RB | 192..1820 | 16..1644 | 8145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12683314..12684099 | 1539..754 | 3930 | 100 | Minus |
| 3R | 32079331 | 3R | 12687716..12688089 | 389..16 | 1870 | 100 | Minus |
| 3R | 32079331 | 3R | 12684154..12684523 | 758..389 | 1835 | 99.7 | Minus |
| 3R | 32079331 | 3R | 12683136..12683242 | 1644..1538 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:55:59 has no hits.
BS29527.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-18 15:59:16 Download gff for
BS29527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RA | 193..1854 | 17..1678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:41 Download gff for
BS29527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RA | 193..1854 | 17..1678 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:11 Download gff for
BS29527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kar-RA | 193..1854 | 17..1678 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:11 Download gff for
BS29527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12682508..12682542 | 1644..1678 | 100 | <- | Minus |
| 3R | 12683137..12683241 | 1539..1643 | 100 | <- | Minus |
| 3R | 12683315..12684098 | 755..1538 | 100 | <- | Minus |
| 3R | 12684158..12684522 | 390..754 | 100 | <- | Minus |
| 3R | 12687716..12688088 | 17..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:41 Download gff for
BS29527.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8508230..8508264 | 1644..1678 | 100 | <- | Minus |
| arm_3R | 8508859..8508963 | 1539..1643 | 100 | <- | Minus |
| arm_3R | 8509037..8509820 | 755..1538 | 100 | <- | Minus |
| arm_3R | 8509880..8510244 | 390..754 | 100 | <- | Minus |
| arm_3R | 8513438..8513810 | 17..389 | 100 | | Minus |
BS29527.pep Sequence
Translation from 16 to 1677
> BS29527.pep
MAENEPLNDLQSQVNGRILPAANGHTASATNGLVHANGKDAMKPSAPVQN
GNGNANGTHIEAPCCRDIHGKEPPDGGARAWLVMVSAFLCNGIIFGFINT
YGVIHSLLTDRLTKLGDPEASSKAALIGALAIGTTFLFSTMAGCLTDKIG
LRLTTFAGGVLSAGGLLLSSFCTENIGALYFTYGIMFGLGAALAYTPTLA
ILGHYFKRYLGKVSGFVTAGSSVFTVILPPCLDKLLGSYGLEGTLRIMSL
VSAFIILCSFVYKPLHPPPEPPKKKPGRSRINLFLRSIINVEIWKRKRFV
IWALCVPLALFGYFVPYVHMMQFVKTTFPGEDVNLPVMCIGITSGIGRLI
FGVIADMPGVNRMYLQQLSLVSIGLVTLLLPLTNSYVILVSFTLVMGLFD
GCFISLLGPIAYEICGPSGATQAIGFLLGLSSIPLTVGPPVAGMIFDSTN
SYTLPLILAGLPPLLGSSLLFLIKCVKEEENGVSAPRAVVLANGDIEIAG
NGHYRSAGTKSSAPLMGATNGINGSAPASPTIQSNGHVDNGTGKLAVTNG
SAS*
BS29527.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kar-PA | 553 | CG12286-PA | 1..553 | 1..553 | 2859 | 100 | Plus |
| kar-PB | 612 | CG12286-PB | 1..543 | 1..543 | 2813 | 100 | Plus |
| CG11665-PB | 658 | CG11665-PB | 8..234 | 37..265 | 285 | 33.3 | Plus |
| CG11665-PA | 658 | CG11665-PA | 8..234 | 37..265 | 285 | 33.3 | Plus |
| Mct1-PB | 626 | CG3456-PB | 417..603 | 288..473 | 250 | 28.9 | Plus |
