Clone BS29537 Report

Search the DGRC for BS29537

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:295
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG10257-RA
Protein status:BS29537.pep: full length peptide match
Sequenced Size:719

Clone Sequence Records

BS29537.complete Sequence

719 bp assembled on 2012-05-25

GenBank Submission: KX803976

> BS29537.complete
GAAGTTATCAGTCGACATGTCCTTTCTTTCGCCCACACTGCGCCTGGAGA
ATCTGTCCACGCAGCCCACGATGACGCAGGATCATGTGCCCGAGGACCAG
CGCTATAACAAACAGAATATTGTGGCTCAATGGTGTGTGCCCATCAATGG
CAAGATGTACCGCATCGAGCTGGAACATGGCACAACCAGTGGGCGGCGCA
TGATTTGGGTCAATGGACGGGAAGTCCTGCGTCGCGACTGGATGTTCAAA
CTGGTTGGCGAAGACACCTTTCACATCGATCAGACGCGCTGCATCATACG
CGTTGATCCTGCGCCGGGCTTCAAATACGAGTACTCCCTCTACATCGACG
GCAAATCGCACGACCAGTACACCGAGGACATGACACGGCAATATCGACTG
TGGCTATATACGGATGATGCGGCCGCCGATGCGCCGCAGGAATATAGAAT
AATGCTCAAACTGGACACGCTGAGTCTCTACGTAAACGATGAGCTGCGCA
CCGAGGAGTCGGTTTTTGTTCACGGCGGCACAGACACCAAGTTCCTGCTG
CAGGACACGGAATTCGTGCTTCAGGCACGCTCAAGTGGCAATAAACATGA
TGGCATCGTTCACACTCTGCTGGCGAATGGGGTGGCAGTTCCGGAGGCGA
AGATTCAGGAGATTATGCAAGAGCCGGTCTCCATTTTGCAGAGCAGCAAC
TGAAAGCTTTCTAGACCAT

BS29537.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10257-RA 687 CG10257-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:29:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10257-RA 1377 CG10257-RA 554..1241 16..703 3440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14943770..14944058 220..508 1445 100 Plus
2R 25286936 2R 14944137..14944333 507..703 985 100 Plus
2R 25286936 2R 14942951..14943089 16..154 695 100 Plus
2R 25286936 2R 14943197..14943265 153..221 345 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:29:32 has no hits.

BS29537.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:19 Download gff for BS29537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 342..1027 17..702 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:48 Download gff for BS29537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 555..1240 17..702 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:53 Download gff for BS29537.complete
Subject Subject Range Query Range Percent Splice Strand
CG10257-RA 555..1240 17..702 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:53 Download gff for BS29537.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14942952..14943089 17..154 100 -> Plus
2R 14943199..14943264 155..220 100 -> Plus
2R 14943771..14944058 221..508 100 -> Plus
2R 14944139..14944332 509..702 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:48 Download gff for BS29537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10830704..10830769 155..220 100 -> Plus
arm_2R 10831644..10831837 509..702 100   Plus
arm_2R 10830457..10830594 17..154 100 -> Plus
arm_2R 10831276..10831563 221..508 100 -> Plus

BS29537.pep Sequence

Translation from 16 to 702

> BS29537.pep
MSFLSPTLRLENLSTQPTMTQDHVPEDQRYNKQNIVAQWCVPINGKMYRI
ELEHGTTSGRRMIWVNGREVLRRDWMFKLVGEDTFHIDQTRCIIRVDPAP
GFKYEYSLYIDGKSHDQYTEDMTRQYRLWLYTDDAAADAPQEYRIMLKLD
TLSLYVNDELRTEESVFVHGGTDTKFLLQDTEFVLQARSSGNKHDGIVHT
LLANGVAVPEAKIQEIMQEPVSILQSSN*

BS29537.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10257-PA 228 CG10257-PA 1..228 1..228 1204 100 Plus