BS29540.complete Sequence
332 bp assembled on 2012-05-25
GenBank Submission: KX801569
> BS29540.complete
GAAGTTATCAGTCGACATGTCGCAATCCGATAACGTGGCACGTGAGCAAA
CTGCGGCAAATGCAGGGCCGGATGCATGTCAAGGATGCCGCGGCCAATTG
CCAAATGCCACGCCCGTGGAAGTCGAGGACATGGCCTTGCCGTCGATGGA
GCGTCTCATTCGAAAGGCCAACATGGCCCAGAAAATGCTGAACGATGTGA
TGAAACAGATCCAGAAGCAGCAGCAGCAGGAATCTCAACTCTCCATCAAG
GAGACCAAGTCCAAGCACCGCAGCTCCGATGGAGTTCCAGTTCCGACCAC
AGTGACTGCGAGCTGAAAGCTTTCTAGACCAT
BS29540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8620-RA | 300 | CG8620-PA | 1..300 | 17..316 | 1500 | 100 | Plus |
| CG8620-RB | 564 | CG8620-PB | 1..268 | 17..284 | 1340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8620-RA | 712 | CG8620-RA | 149..448 | 17..316 | 1500 | 100 | Plus |
| CG8620-RB | 775 | CG8620-RB | 148..415 | 17..284 | 1340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7158247..7158514 | 17..284 | 1340 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:29:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 1731..1794 | 190..253 | 104 | 62.5 | Plus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 240..273 | 299..331 | 104 | 82.4 | Plus |
BS29540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:20 Download gff for
BS29540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8620-RA | 149..447 | 17..315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:50 Download gff for
BS29540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8620-RA | 149..447 | 17..315 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:54 Download gff for
BS29540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8620-RA | 149..447 | 17..315 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:54 Download gff for
BS29540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7158247..7158514 | 17..284 | 100 | -> | Plus |
| 3L | 7158579..7158609 | 285..315 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:50 Download gff for
BS29540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7151347..7151614 | 17..284 | 100 | -> | Plus |
| arm_3L | 7151679..7151709 | 285..315 | 100 | | Plus |
BS29540.pep Sequence
Translation from 16 to 315
> BS29540.pep
MSQSDNVAREQTAANAGPDACQGCRGQLPNATPVEVEDMALPSMERLIRK
ANMAQKMLNDVMKQIQKQQQQESQLSIKETKSKHRSSDGVPVPTTVTAS*
BS29540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8620-PA | 99 | CG8620-PA | 1..99 | 1..99 | 498 | 100 | Plus |
| CG8620-PB | 187 | CG8620-PB | 1..89 | 1..89 | 449 | 100 | Plus |
