BS29542.complete Sequence
455 bp assembled on 2012-05-25
GenBank Submission: KX802348
> BS29542.complete
GAAGTTATCAGTCGACATGAATTTTCTGCGGCAATCCTTTGGCATTACGA
AACAGTTGGCTTCGCAGGCCATCCAGTGCAGCTATGAGACCGCCGTCCGT
GGAATGGCATCGCTGCAGCAGATGCACCGCAGCGGACCGCACATAAAGAC
GCGTCCGCCGCGCCAGCCGCTGGATGGAAAGCCCTTCGCCAAGGGCGTTG
TCCTGAAGACGCTGATAAAGAAGCCCAAGAAGCCGAACTCGGCCAATCGA
AAGTGCGTGCTGGTGCGCCTCTCCACCGGCAAGGAGATGGTGGCCTACAT
CCCCGGCATCGGGCACAACCTGCAAGAGCACAACATTGTACTGTGCCGCG
TGGGGCGTCTGCAGGACGTGCCCGGCGTTAAGCTGAAGGCTGTGCGCGGA
GTCTACGACTTGGCGCACGTCGTCAAGAAGAGCCAATAGAAGCTTTCTAG
ACCAT
BS29542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tko-RB | 423 | CG7925-PB | 1..423 | 17..439 | 2115 | 100 | Plus |
| tko-RC | 465 | CG7925-PC | 94..465 | 68..439 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tko-RB | 663 | CG7925-RB | 191..614 | 16..439 | 2120 | 100 | Plus |
| tko-RC | 1596 | CG7925-RC | 1176..1547 | 68..439 | 1860 | 100 | Plus |
| tko-RC | 1596 | CG7925-RC | 191..244 | 16..69 | 270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2442362..2442733 | 439..68 | 1860 | 100 | Minus |
| X | 23542271 | X | 2443734..2443786 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:29:42 has no hits.
BS29542.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:21 Download gff for
BS29542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tko-RB | 192..614 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:55 Download gff for
BS29542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tko-RB | 192..614 | 17..439 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:58 Download gff for
BS29542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tko-RB | 192..614 | 17..439 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:58 Download gff for
BS29542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2442362..2442732 | 69..439 | 100 | <- | Minus |
| X | 2443734..2443785 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:55 Download gff for
BS29542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2336395..2336765 | 69..439 | 100 | <- | Minus |
| arm_X | 2337767..2337818 | 17..68 | 100 | | Minus |
BS29542.pep Sequence
Translation from 16 to 438
> BS29542.pep
MNFLRQSFGITKQLASQAIQCSYETAVRGMASLQQMHRSGPHIKTRPPRQ
PLDGKPFAKGVVLKTLIKKPKKPNSANRKCVLVRLSTGKEMVAYIPGIGH
NLQEHNIVLCRVGRLQDVPGVKLKAVRGVYDLAHVVKKSQ*
BS29542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tko-PB | 140 | CG7925-PB | 1..140 | 1..140 | 722 | 100 | Plus |
| tko-PC | 154 | CG7925-PC | 32..154 | 18..140 | 639 | 100 | Plus |
| RpS23-PA | 143 | CG8415-PA | 31..124 | 42..127 | 138 | 39.4 | Plus |
| RpS23-PB | 143 | CG8415-PB | 31..124 | 42..127 | 138 | 39.4 | Plus |
