BS29552.complete Sequence
1055 bp assembled on 2012-05-25
GenBank Submission: KX801920
> BS29552.complete
GAAGTTATCAGTCGACATGGCCGCCAAGACGGACGAATCGTCGCCAGCCG
TGGCGTCAAGCACAAGCAGCAATCCCGCTCCCTCCAGCGGACGCCACCAG
TTGCGACCCGTGAAGTTTGACTACGCGGACTCATTCGCCTGCACTTACAT
CGTTTCCGTGGTGGCCGCCTCCATTGCAGAGCTCGCGACCTATCCCTTGG
ACCTGACCAAGACGCGTCTGCAGATCCAGGGCGAAGGAGCCGCCCATTCG
GCGGGAAAGTCCAATATGCAATACCGCGGCATGGTGGCCACCGCCTTCGG
GATTGCGCGTGAGGAGGGCGCCCTGAAGCTGTGGCAGGGCGTAACGCCGG
CGCTCTACCGACACGTCGTCTATAGCGGTGTGAGGATCTGCAGCTACGAC
CTGATGCGCAAGGAGTTCACACAGAACGGCACCCAGGCTCTGCCGGTTTG
GAAGTCGGCGCTGTGCGGCGTCACGGCCGGAGCCGTTGCCCAGTGGCTTG
CCTCGCCCGCTGACCTCGTCAAGGTGCAAATCCAAATGGAGGGCCGACGA
CGTCTGATGGGCGAGCCACCGAGGGTGCACTCCGCTGGCCATGCCTTCCG
CCAGATCGTGCAGCGTGGCGGAATTAAGGGCCTGTGGAAGGGCAGCATCC
CGAATGTGCAGCGAGCGGCGTTGGTCAATCTGGGCGACCTAACCACATAC
GACACCATCAAGCACCTGATCATGAATCGCCTGCAGATGCCCGACTGTCA
CACAGTGCACGTGCTGGCCTCCGTTTGTGCCGGATTCGTGGCAGCGATCA
TGGGCACGCCAGCTGATGTGGTGAAGACGCGCATCATGAACCAGCCCACC
GACGAGAATGGCCGGGGCCTGCTCTATCGCGGATCCGTGGACTGCCTGCG
ACAGACGGTTTCGAAGGAGGGCTTTGTGGCGCTGTACAAAGGCTTTCTGC
CCTGCTGGATACGAATGGCGCCGTGGTCGCTCACCTTCTGGCTGTCCTTC
GAACAGATCCGCAAGATGATCGGAGCCTCCGGCTACTGAAAGCTTTCTAG
ACCAT
BS29552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4A-RB | 1023 | CG6492-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
| Ucp4A-RA | 1023 | CG6492-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
| Ucp4A-RC | 387 | CG6492-PC | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4A-RB | 2022 | CG6492-RB | 433..1455 | 17..1039 | 5115 | 100 | Plus |
| Ucp4A-RA | 1803 | CG6492-RA | 493..1515 | 17..1039 | 5115 | 100 | Plus |
| Ucp4A-RC | 1693 | CG6492-RC | 742..1405 | 376..1039 | 3320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17846929..17847420 | 374..865 | 2460 | 100 | Plus |
| X | 23542271 | X | 17845510..17845758 | 17..265 | 1245 | 100 | Plus |
| X | 23542271 | X | 17847481..17847656 | 864..1039 | 880 | 100 | Plus |
| X | 23542271 | X | 17846683..17846792 | 266..375 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:29:59 has no hits.
BS29552.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:25 Download gff for
BS29552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RB | 394..1415 | 17..1038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:04 Download gff for
BS29552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RA | 493..1514 | 17..1038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:04 Download gff for
BS29552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4A-RA | 493..1514 | 17..1038 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:04 Download gff for
BS29552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17847482..17847655 | 865..1038 | 100 | | Plus |
| X | 17845510..17845758 | 17..265 | 100 | -> | Plus |
| X | 17846683..17846792 | 266..375 | 100 | -> | Plus |
| X | 17846931..17847419 | 376..864 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:04 Download gff for
BS29552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17741515..17741688 | 865..1038 | 100 | | Plus |
| arm_X | 17739543..17739791 | 17..265 | 100 | -> | Plus |
| arm_X | 17740716..17740825 | 266..375 | 100 | -> | Plus |
| arm_X | 17740964..17741452 | 376..864 | 100 | -> | Plus |
BS29552.pep Sequence
Translation from 16 to 1038
> BS29552.pep
MAAKTDESSPAVASSTSSNPAPSSGRHQLRPVKFDYADSFACTYIVSVVA
ASIAELATYPLDLTKTRLQIQGEGAAHSAGKSNMQYRGMVATAFGIAREE
GALKLWQGVTPALYRHVVYSGVRICSYDLMRKEFTQNGTQALPVWKSALC
GVTAGAVAQWLASPADLVKVQIQMEGRRRLMGEPPRVHSAGHAFRQIVQR
GGIKGLWKGSIPNVQRAALVNLGDLTTYDTIKHLIMNRLQMPDCHTVHVL
ASVCAGFVAAIMGTPADVVKTRIMNQPTDENGRGLLYRGSVDCLRQTVSK
EGFVALYKGFLPCWIRMAPWSLTFWLSFEQIRKMIGASGY*
BS29552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4A-PB | 340 | CG6492-PB | 1..340 | 1..340 | 1772 | 100 | Plus |
| Ucp4A-PA | 340 | CG6492-PA | 1..340 | 1..340 | 1772 | 100 | Plus |
| Ucp4B-PA | 337 | CG18340-PA | 40..337 | 44..340 | 772 | 48 | Plus |
| Ucp4C-PA | 335 | CG9064-PA | 40..335 | 44..340 | 621 | 40 | Plus |
| Bmcp-PB | 303 | CG7314-PB | 10..302 | 44..333 | 496 | 36.5 | Plus |
