BS29553.complete Sequence
515 bp assembled on 2012-05-25
GenBank Submission: KX803327
> BS29553.complete
GAAGTTATCAGTCGACATGGGCAAAGTGAAAGTAGAGCGCTCCGAGGATG
CCGATGAGTCCGTTGTGGCCAGCGGCGATGTTACCATCAAGGAGGAGGAG
TCCTACGACGACAAGCTGATCTTTGTGAACGCCATCGCGAAACCGATGGC
AGGTAAAAAACTGGCCAAAAAGTGCTACAAACTGGTGAAGAAGGCCATGA
AGCACAAGACTTTCCTGCGAAATGGACTTAAGGATGTACAGACTCGCCTG
CGCAAGGGCGAAACTGGCATTTGCATCTTTGCTGGCGACGTTACACCTGT
GGACATCATGTGCCACTTACCAGCCGTCTGCGAGGAGAAGGGCATCCCCT
ATACCTACACCCCCAGTCGAGCGGATCTTGGAGCTGCCATGGGCGTGAAG
CGCGGTACAGTCGCCCTGCTGGTCCGCCAGAACGAGGAGTACAAGGATCT
GTACGACGAGGTCAAGGAGGAGCTGTCTGCACTAAACATACCCGTCTAGA
AGCTTTCTAGACCAT
BS29553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NHP2-RB | 483 | CG5258-PB | 1..483 | 17..499 | 2415 | 100 | Plus |
| NHP2-RA | 483 | CG5258-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NHP2-RB | 781 | CG5258-RB | 79..562 | 17..500 | 2420 | 100 | Plus |
| NHP2-RA | 667 | CG5258-RA | 79..562 | 17..500 | 2420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14801840..14802090 | 267..17 | 1255 | 100 | Minus |
| 3L | 28110227 | 3L | 14801547..14801780 | 500..267 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:30:02 has no hits.
BS29553.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:25 Download gff for
BS29553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NHP2-RA | 100..582 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:07 Download gff for
BS29553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NHP2-RA | 79..561 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:07 Download gff for
BS29553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NHP2-RA | 79..561 | 17..499 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:07 Download gff for
BS29553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14801548..14801779 | 268..499 | 100 | <- | Minus |
| 3L | 14801840..14802090 | 17..267 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:07 Download gff for
BS29553.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14794648..14794879 | 268..499 | 100 | <- | Minus |
| arm_3L | 14794940..14795190 | 17..267 | 100 | | Minus |
BS29553.pep Sequence
Translation from 16 to 498
> BS29553.pep
MGKVKVERSEDADESVVASGDVTIKEEESYDDKLIFVNAIAKPMAGKKLA
KKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCH
LPAVCEEKGIPYTYTPSRADLGAAMGVKRGTVALLVRQNEEYKDLYDEVK
EELSALNIPV*
BS29553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NHP2-PB | 160 | CG5258-PB | 1..160 | 1..160 | 818 | 100 | Plus |
| NHP2-PA | 160 | CG5258-PA | 1..160 | 1..160 | 818 | 100 | Plus |
| hoip-PB | 127 | CG3949-PB | 5..125 | 37..156 | 194 | 35.2 | Plus |
| hoip-PA | 127 | CG3949-PA | 5..125 | 37..156 | 194 | 35.2 | Plus |
