BS29555.complete Sequence
1154 bp assembled on 2012-05-25
GenBank Submission: KX804316
> BS29555.complete
GAAGTTATCAGTCGACATGAAGTCGATGCGCACAGCGACATCGCTGGCTT
TGGTCCTGCTCCTGGCCACCAGCTACGTCCGAGCTGAGGACGAGAAGGCC
GCCGCTCCCGCCGAGGAGAAGAAGGCTGAGCCGGAGGCCAAGGCTGCCGA
GGCAGCGGCTAGCGAGGATACGACCAAGTCGAAGAGAGGACTGCACCACT
ACGAGGACTATCACCATCATCACGTGCCTCACTTCCCGGTGCACGAGGAG
AAGACACTGACCGTCATTAAGAAGGTGCCAGTGCCCGTGCCCATCGAGAA
GATCGTACATGTGCCCGTCGAGAAGCACATCCATGTGCCCGTTAAGGTCA
AGGTGCCAAAGCCCTATCCGGTGATCAAACACATTCCCTACGAGGTGAAG
GAGATCGTGAAGGTTCCCTACGAGGTGCCAGCTCCCTATCCCGTCGAGAA
GCAGGTCCATGTGCCCGTCCATGTGCACTACGACCGACCAGTGCCCGTTA
AGGTTCATGTGCCCGCTCCCTACCCAGTCGAAAAGAAGGTCCATGTGCCA
GTGAAGGTTCATGTTCCGGCTCCCTATCCAGTCGAAAAGATTGTCCACTA
CAATGTTGAGAAACACGTGCACGTCGACAAGCCATATCCCGTGGAGAAGG
TTGTCCACTACCCGGTGAAGGTGCCCGTCGACAAGCCAGTGCCCCACTAC
ATCGACAAACCAGTGCCCCACTATGTGGACAAACCAGTGCCAGTGCCCGT
GATCAAGAAGGTGCCAGTGCCCGTCCATGTGCCCTATGATCGTCCCGTGC
CCGTTCATGTCGAGAAGCCAGTGCCCTATGAGGTCAAGGTCCATGTGCCC
GCCCCCTACCCGGTGATCAAGGAAGTGCCAGTGAAGGTGGAGAAACACGT
TCCGTACCCGGTCAAGATCCCCGTGGAGAAGCCCGTCCATGTTCACATCG
AGAAGCACGTGCCGGAATACCATGAGAAGCATGTCACCTACAAGGAGCCG
GAGTTCCACCACAAGCACATCGAGGAGGATCATCACCACGCGCCCATCCA
TCACCATTCGCACCCCATTGTGGAACATGAGCACGAGGTGGAGCATGAAT
TTGCCTCTCATGATTATCATTCATATTACGGTTACTAAAAGCTTTCTAGA
CCAT
BS29555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16886-RA | 1122 | CG16886-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
| CG16886-RB | 1077 | CG16886-PB | 1..1071 | 17..1087 | 5355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16886-RA | 2433 | CG16886-RA | 193..1315 | 16..1138 | 5615 | 100 | Plus |
| CG16886-RB | 2326 | CG16886-RB | 193..1264 | 16..1087 | 5360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13921825..13922462 | 1138..501 | 3190 | 100 | Minus |
| 2L | 23513712 | 2L | 13922523..13922999 | 504..28 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:30:07 has no hits.
BS29555.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:26 Download gff for
BS29555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 190..1309 | 17..1136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:09 Download gff for
BS29555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 194..1313 | 17..1136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:10 Download gff for
BS29555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16886-RA | 194..1313 | 17..1136 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:10 Download gff for
BS29555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13921827..13922460 | 503..1136 | 100 | <- | Minus |
| 2L | 13922525..13923008 | 17..502 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:09 Download gff for
BS29555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13921827..13922460 | 503..1136 | 100 | <- | Minus |
| arm_2L | 13922525..13923008 | 17..502 | 98 | | Minus |
BS29555.pep Sequence
Translation from 16 to 1137
> BS29555.pep
MKSMRTATSLALVLLLATSYVRAEDEKAAAPAEEKKAEPEAKAAEAAASE
DTTKSKRGLHHYEDYHHHHVPHFPVHEEKTLTVIKKVPVPVPIEKIVHVP
VEKHIHVPVKVKVPKPYPVIKHIPYEVKEIVKVPYEVPAPYPVEKQVHVP
VHVHYDRPVPVKVHVPAPYPVEKKVHVPVKVHVPAPYPVEKIVHYNVEKH
VHVDKPYPVEKVVHYPVKVPVDKPVPHYIDKPVPHYVDKPVPVPVIKKVP
VPVHVPYDRPVPVHVEKPVPYEVKVHVPAPYPVIKEVPVKVEKHVPYPVK
IPVEKPVHVHIEKHVPEYHEKHVTYKEPEFHHKHIEEDHHHAPIHHHSHP
IVEHEHEVEHEFASHDYHSYYGY*
BS29555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16886-PA | 373 | CG16886-PA | 1..373 | 1..373 | 2062 | 100 | Plus |
| CG16886-PB | 358 | CG16886-PB | 1..357 | 1..357 | 1966 | 100 | Plus |
| CG30101-PA | 328 | CG30101-PA | 23..327 | 33..349 | 660 | 48.8 | Plus |
| CG16885-PA | 270 | CG16885-PA | 72..220 | 138..301 | 327 | 48.2 | Plus |
| CG16885-PA | 270 | CG16885-PA | 22..228 | 38..220 | 318 | 41 | Plus |
| CG16884-PA | 277 | CG16884-PA | 100..262 | 66..246 | 316 | 44.6 | Plus |
| CG16885-PA | 270 | CG16885-PA | 77..243 | 177..370 | 228 | 36.9 | Plus |
