BS29558.complete Sequence
3758 bp assembled on 2013-01-23
GenBank Submission: KX803304
> BS29558.complete
GAAGTTATCAGTCGACATGCTAGCCAACGATTCTGCAACGACTGACAGCG
AGGTGTCCACACCGCCGTCGTCGAGGAAAGATTTGGCAGATGGTGTTGCC
GAGGGTGACAACGACAACGACATCGATACCGGCGACACGGACGCAAATGC
GGATGAAGATGTGGATGCGGCTGCTGCCATTGCCCTGGAGGCCGAAGAGC
GCGAGGAGCTGCAACAGTTCATAAGCGAGCTGCGCGAGAAGATCGAGAGC
AAGCGACAGCTGCGCCTCCAAAACTCCACAATCGAGCTGCCCGGTGAGGA
GTACTTCGCCAAACTGGACTCCAATCTCAAAAAGAACACGGCATTCGTCA
AGAAACTGAAACTATTCACGGCCACACAGCTGGACGGACTATTGCGTGAG
ATATCTGCTCTAAACCTGAGCAAATACATCTCGGAAATATGCGCCGCGCT
GGTCGAGGCCAAACTGAAAATGACTGATGTGCCGGCGGTGGTGACGCTGG
CCTCTCGGCTGCACTGCACATATGCCGACTTCGATGTCCATTTTCTGGAG
GCCTGGCAAAAGGCACTGAACATCAAGGCCACCGAGAAGATTGGCAATCC
GAGCAAACTGCGCGTGGATCTTCGCCTGTTCGCCGAACTAGTCAGCTCTG
GTGTGATCCAAATGAAGCCCGGATTGGCCCAACTGGGTGTTGTTCTGGTG
CATTTGATTGCCCTGGACAAGGATGACCACAGCAACTTCTCGATCATCCT
CTCATTCTGCCGGCACTGCGGCGAGGAGTACGCCGGCCTAGTGCCGCAAA
AGATGCAACAGTTGGCCACCAAATACGGGGTGGAGGTGCCGAAATCCGAC
TTCCTGACTGCCGACAAGCAGCTCAATCTGCGCACCATGCTTAAGGGTTA
CTTCAAGGCCCTGTGCAAGCATGTCCTGGCCGAGCAGGCCGAACTGATGA
ACATGACCAAGAACATTCGGCGCACCATGGAGTGCAAGGGTGAGATATCC
ACGGAGAAGCGCGAGAAGTGTGAACTGATGCAGGCCGGATTCGATAAGCT
GCTGGCCTCCGCTCAATCGCTGTCGGAACTGCTGGGTGAACCACTGCCCG
AGCTGGCCAAGGAGTCTGAGGGCTGTAATCCGGGCACAGTCATCGACAAC
ATGCTGGACAGTGCCTCCTTTGGTGTGCTGGATCCGTGGGGCGACGAGGA
GACCCGAGCCTTCTACACGGATTTGCCCGATTTGAGACAGTTTCTGCCAA
ACTTTTCGGCACCCAAAGTCGATTTGGAAACGTTAGAGGAGCCCAGTGAA
CTAACCGAAGAAGCGATCGATGCCAATCTAGATGCCGAAATGGATCTAGA
TGATCCACCGTCCACCACTTCGGATACGACTCCGGAGAATCCAATCGAAG
AGCAGCCAACGACGCCAGTTGCCGCTGCGGAGGATCTCAAGCCGCAGAAG
ATGGGTAACGCTCTAATGGAACTGGGTCGCCAGCAGCAGCAGCAAAGTCA
GCTCAACCAGAATCCGATCCAGATCCAAAACCAGATGCGTCAGCAGTTCG
ATGGCTTCCTGGTCAACCTATTCAACTGTGTGAACAAGGAGCTGATCGAT
TCGGCGGCCATCGAGTTCCTGCTTAACTTCAATACCAAGCATCAACGCAA
GAAGCTGACGCGTACGATATTCTCGGTGCAGCGTACGCGTCTGGATATCC
TGCCCTATCTCTCCCGCTTCGTGGCCATTGTGCATATGTGCAATACCGAT
GTGGCCACCGATTTGGCCGAACTGCTGCGCAAGGAGTTCAAGTGGCACAT
TCACAAGAAGAACCAGCTGAATATCGAGACGAAGCTTAAGATTGTGCGAT
TCATTGGTGAACTGGTTAAGTTTGGTTTGTTTAAAAAGTTCGATGCCTTA
GGATGTCTGAAGATGCTGCTAAGGGACTTTCAGCATCATCAAATCGAGAT
GGCCTGTGCCTTTGTGGAAGTCACCGGCGTCTATCTGTACAATTGCCGGG
ATGCCCGTCTGCTGATGAATGTGTTCCTGGACCAGATGCTGCGCTTGAAA
ACAGCCACGGCAATGGACTCGCGACATGCGGCGCAGATTGAGAGCGTGTA
CTATTTGGTAAAGCCGCCGGAATCGTCCAAGCGAGAGCCCATGGTTCGGC
CGGCAATGCATGAGTACATCCGTTACTTGATCTTCGAGGAGCTTTGCAAA
CAGAACGTTGATCGTTGTATCAAAATGCTGCGCCGCATCGATTGGCAGGA
TCCGGAGACAAATTGTTATGCCATTAAGTGCCTCAGCAAGGCGTATCTGC
TGCGCTTCCAGCTCATCCGCTGTCTGGCCGATCTCGTATCCGGACTGAGC
TCCTATCAGCCACGAGCGGTTACCATCGTGATCGATAATGTGTTTGAGGA
TATACGCGCTGGCCTCGAGATTCATTCGCCACGCATGGCACAGCGGCGCA
TCGCGATGGCCAAGTATCTGGGCGAGATGTACAACTACAAGCTGGTGGAG
TCCACGAACATTCTTAATACGCTGTACTCCATCATCTCGCTGGGCGTATC
GAATGACCAAAATGTCGTCTCGCCACTGGATCCGCCCGATAGCCTGTTCC
GACTGAAGCTTGCCTGTATGCTACTGGACACGTGTGCACCCTACTTCACC
AGCCAGGCCACGCGAAAAAAACTGGACTACTTTCTGGTCTTCTTCCAACA
CTACTATTGGTTCAAGAAATCCCATCCCGTGTTCAGCAAAACGGAGAACA
CCTCCGATTTGTTCCCCATCCTAATGGATCACACCTATCGCGACTGTCTA
CTCAATGTGCGGCCCAAGCTGAAGATTTACAAGAGTCTAGAGCAGGCCAA
GGCGGCGATTGATCATCTGCAGGAGAAGCTCTATCCGCAGCTAAAGACTA
CCAATAATGCTCAGGATCCGTCGCTGGGCACAATCAGTGAAATAAGCGAG
ATAGACGAGGGCGGCACTGATGAGGATTCTGGGTCATCGAATGATCAGCG
AGAGCGCCAAGTGTCGGGCCAAGAGCAGGACCAGAGCAACGACTGGACAG
AGAACGAGGCGGAGCCACCGCTGCCGCCGCTCCCGCCGCCAGAAAAGTCC
AAGGAGGACCTGGAGTTCGAGCAATTGTACGAAAAAATGACCACAGACTC
GTACCAAGAACGGCTTAAGGAGCCGATAAAGGCTACGGCCAAGGATATAC
CTGTGCCGATGATGGCGCGCCTGCAAAAAAAATCGTACGATCAGATAACA
GGTGCTCAGACCATCGGCCCTGGGATCAACAATATGTCACAGATCTCAAA
GTCGGTCCCCAATCAGGACGGAACGCCTGGCTCTCCAGGTGCAGATTCAC
CAGATGGCAACGGCAAATCCGGCGGCGGTGTAGGTGGTAGCGATGTTGGT
GCTGCTGGTGCTGCTGGTGCTTCTGGTGCTACATCTGTACCCTTTGTGCT
AATGGTGCGCGGCCACAAGGGCGGAAAGCAGCAATTTAAGTCATTTGTGG
CACCATCCGACTCGCACTTGGCCACCAACCTAAAGCGGCAGGAGCAGATG
ATACGCGAGGAGAAGGAGAAGGTCAAGCGCCTTACGCTTAACATAACTGA
GCGCATTGAGGAGGAGGACTACCAGGAGTCGTTGATGCCGCCGCAGCATC
GAAACTTCACCCAGAGCTACTACCAGAAGCCCAATAAGCACAAGTTCAAG
CACCAAAAGGGTGCGCCCGATGCGGACCTCATATTTCACTGAAAGCTTTC
TAGACCAT
BS29558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Upf2-RA | 3726 | CG2253-PA | 1..3726 | 17..3742 | 18630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Upf2-RA | 5078 | CG2253-RA | 311..4039 | 16..3744 | 18645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8072502..8075156 | 2670..16 | 13275 | 100 | Minus |
| X | 23542271 | X | 8071283..8072064 | 3744..2963 | 3910 | 100 | Minus |
| X | 23542271 | X | 8072128..8072420 | 2963..2671 | 1465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1587 | 3438..3377 | 121 | 66.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6913 | 1481..1546 | 121 | 68.1 | Plus |
BS29558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-23 09:16:03 Download gff for
BS29558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf2-RA | 321..4045 | 17..3741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:07 Download gff for
BS29558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf2-RA | 312..4036 | 17..3741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:33 Download gff for
BS29558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Upf2-RA | 312..4036 | 17..3741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:33 Download gff for
BS29558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8071286..8072064 | 2963..3741 | 100 | <- | Minus |
| X | 8072129..8072420 | 2671..2962 | 100 | <- | Minus |
| X | 8072502..8075155 | 17..2670 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:07 Download gff for
BS29558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7965319..7966097 | 2963..3741 | 100 | <- | Minus |
| arm_X | 7966162..7966453 | 2671..2962 | 100 | <- | Minus |
| arm_X | 7966535..7969188 | 17..2670 | 100 | | Minus |
BS29558.pep Sequence
Translation from 16 to 3741
> BS29558.pep
MLANDSATTDSEVSTPPSSRKDLADGVAEGDNDNDIDTGDTDANADEDVD
AAAAIALEAEEREELQQFISELREKIESKRQLRLQNSTIELPGEEYFAKL
DSNLKKNTAFVKKLKLFTATQLDGLLREISALNLSKYISEICAALVEAKL
KMTDVPAVVTLASRLHCTYADFDVHFLEAWQKALNIKATEKIGNPSKLRV
DLRLFAELVSSGVIQMKPGLAQLGVVLVHLIALDKDDHSNFSIILSFCRH
CGEEYAGLVPQKMQQLATKYGVEVPKSDFLTADKQLNLRTMLKGYFKALC
KHVLAEQAELMNMTKNIRRTMECKGEISTEKREKCELMQAGFDKLLASAQ
SLSELLGEPLPELAKESEGCNPGTVIDNMLDSASFGVLDPWGDEETRAFY
TDLPDLRQFLPNFSAPKVDLETLEEPSELTEEAIDANLDAEMDLDDPPST
TSDTTPENPIEEQPTTPVAAAEDLKPQKMGNALMELGRQQQQQSQLNQNP
IQIQNQMRQQFDGFLVNLFNCVNKELIDSAAIEFLLNFNTKHQRKKLTRT
IFSVQRTRLDILPYLSRFVAIVHMCNTDVATDLAELLRKEFKWHIHKKNQ
LNIETKLKIVRFIGELVKFGLFKKFDALGCLKMLLRDFQHHQIEMACAFV
EVTGVYLYNCRDARLLMNVFLDQMLRLKTATAMDSRHAAQIESVYYLVKP
PESSKREPMVRPAMHEYIRYLIFEELCKQNVDRCIKMLRRIDWQDPETNC
YAIKCLSKAYLLRFQLIRCLADLVSGLSSYQPRAVTIVIDNVFEDIRAGL
EIHSPRMAQRRIAMAKYLGEMYNYKLVESTNILNTLYSIISLGVSNDQNV
VSPLDPPDSLFRLKLACMLLDTCAPYFTSQATRKKLDYFLVFFQHYYWFK
KSHPVFSKTENTSDLFPILMDHTYRDCLLNVRPKLKIYKSLEQAKAAIDH
LQEKLYPQLKTTNNAQDPSLGTISEISEIDEGGTDEDSGSSNDQRERQVS
GQEQDQSNDWTENEAEPPLPPLPPPEKSKEDLEFEQLYEKMTTDSYQERL
KEPIKATAKDIPVPMMARLQKKSYDQITGAQTIGPGINNMSQISKSVPNQ
DGTPGSPGADSPDGNGKSGGGVGGSDVGAAGAAGASGATSVPFVLMVRGH
KGGKQQFKSFVAPSDSHLATNLKRQEQMIREEKEKVKRLTLNITERIEEE
DYQESLMPPQHRNFTQSYYQKPNKHKFKHQKGAPDADLIFH*
BS29558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Upf2-PA | 1241 | CG2253-PA | 1..1241 | 1..1241 | 6404 | 100 | Plus |
