BS29564.complete Sequence
3917 bp assembled on 2013-01-22
GenBank Submission: KX805592
> BS29564.complete
GAAGTTATCAGTCGACATGTCGGGCACCAAATACTGTTTCGCAATTGATC
GCGGTGGCACTTTTACGGACGTGTTGTGCATTTGTCCGAATGGCAAAGTG
CGAACCATGAAGTTGCTCTCTGAGGATCCGGAGCGGTACAGCGATGCGCC
CCGGGAGGGCATCCGGCGAATTCTTAAGGAGGAGACCGGTGAAGATCTGG
CCGCGAGCGGCTTGGTGGATACCTCGAAAATCGGTTGGGTTCGCATGGGC
ACTACGGTGGCCACCAATGCTCTCTTGGAACGCAAGGGAGATCCAGTGGT
CTTGGTGGTCAACAGTGGTTTCCGGGATCTGCTCTACATTGGCAACCAGG
CCAGGCCGAAGATCTTCGATCTAAACATTCGCAAGCCAGCGAATCTATAC
AAGTCCGTAGTCGAGGTGGATTGCCGCATAGTTCCAAAGCAGGCGGACCG
CTGTGAGCTCAACCACAGCTGGAAAGAGTTGGAGGGTGTGGCCGGCACCA
AGTATCTGGAGGTGCGTCCCGTTGATGAGGTGGCAGTACGACAAGCCCTC
TCAGATGCCCGTGATCAGGGTGTCTCATCCGTTTCCGTGGTTTTGGCCCA
CAGCTACGCCTGTCCGGAGCACGAGCTCCGAGTGGGAGCCATTGCCCGGG
AGCTCGGCTTCAGTCATGTGACGCTGTCCCACCAGGCTATGCCCATGTGT
CGGGTGGTGGCCCGTGGCTATACGGCGTGCGCAGAGGCCTACTTGACTCC
TCATGTAGACCGCTACTTGGCCAGCTTCAAATCCGGTTTCGACAAGCAGT
TGGAGGGTGTGGATGTGCTCTTTATGCAATCTGATGGAGGTCTGACCAAT
ATGGAGAACTTCCGTGGAGCTCGGGCAATTCTATCGGGTCCAGCTGGAGG
AGTTGTAGGATACGCACTGACAGGAGCCCGGGAAACGGAACTGCCACTGA
TCGGTTTTGACATGGGCGGCACATCTACGGATGTGTCTCGGTATGCCGGA
ACCTACGAGCACGTGATCGAAAGCACCACAGCAGGTGTAACGATCCAGGC
TCCGCAGCTGGACATCAACACTGTTGCTGCAGGCGGTGGATCCCGTCTTT
TCTTCCGATCTGGCATATTTGTGGTGGGTCCAGAATCGGCAGGATCTCAT
CCTGGACCTGCTTGCTACAAGAAGGGCGGGCCACTGACAGTCACTGATGC
CAATCTAATACTAGGACGCATTCTGCCACAATACTTCCCGAAGATCTTTG
GTCCGCAGGAGAACGAGCCGCTGGATCATGAGATCGCCAGGAGTAAGTTT
GTGGAGCTCCAGGCCGAGATCAACAACTATTTGAAGAGTTCCGGAGACAA
TAGAGTTTTAAGCGTCGAGGATGTGGCCCTCGGTTTTATTCGGGTGGCCA
ACGAAACCATGTGTCGTCCGATTCGTGCCTTAACCCAATCCCGAGGATTG
GATACGGCCAACCATGTGCTCTCCTGCTTTGGAGGAGCCGGTGGTCAGCA
CGCCTGTTCTATTGCCCGAAATCTGGGAATTGCGAAGGTAGTCGTCCACA
AGTACGCCGGAATTCTATCTGCCTATGGAATGGCTCTGGCGGACGTGGTG
CAAGAATTCCAAGAACCAAATGGCTTGGAGTTCAGCGATGCGAATGCCCA
GCAGCTGAAGGAGCGCTTGGATGCCTTGTCCAAGCAATGTCAGGACAAGT
TGTCTGAGCAGGGATTCAAACGCATTGAGCTGGAGCCCTTCCTTCACTTG
CGATACGAAGGCACCGATGGCGCCTTAATGGTTGCTCCTTCAACTGGAAA
GCAGTCATCCGATTCAAATCCCCTATTAGCGGCCTACGGAGATTTCCATG
CCACCTTCCTGGAGCGCTATCGCACTGAGTTTGGATTCGTATTGCAAAAC
AGACGGATTATTGTCGACGACATTCGCATTCGAGGACTGGGCAAGAACGA
AACCCCACCGGAGTCGAAAGTTCAGGCTGCCGCAGAAGCGAAGCCACCAG
CGGAGGCGAATACACGACTGTATTTTGACCAGGGCGCATTCGATTCTCCG
ATTTACCTGACCAAGAACCTACTGGCCGGACATAGGATCACCGGACCAGC
GGTGCTTATTGACCAGCTCTCGACCATCGTCGTGGAACCAGAGTGCGGTA
TCCAAGTTACTCAGTTTGGAGACCTCATCATGGACGTGAAAACGGGTGGC
AAGCATGGCATCAATGCAGACTTGGATCCTGTCCATCTGAGCATCTTTAG
CCATCGCTTCATGAGCATCGCCGAGCAGATGGGCAGGGTGCTCCAGCGCA
CTTCGATTTCCACCAACATCAAGGAGCGTCTGGACTTCTCCTGTGCCCTT
TTCGGACCAGATGGTGGTTTGGTTAGCAATGCTCCCCACATTCCAGTTCA
CCTGGGTGCCATGCAGGAAACCGTACAGTATCAACTAAGGGTGCGCGGAG
AGACCCTCAAGAACGGCGATGTTATCCTGGCCAACCATCCATCGGCAGGA
GGATCTCACTTGCCCGATTTAACTGTCATCACGCCGGTCTTTTATGAAAC
TCATCCGCGACCAGTTTTCTTTGTGGCCTCCCGTGGTCACCATGCGGATA
TTGGTGGAATTACTCCTGGATCTATGCCGCCGCATTCCACCTCGTTGGCC
CAGGAAGGTGCCGCCTTCAAGTCCTTCCTGATTGTAGAGAATGGCCTGTT
TCAGGAGCAGCAGATCATCGAGCAGCTGACCACGCCCACGGCAGCAAAGG
GAGCTGTGGGAACCCGGAACCTGAGCGACAACCTATCAGATCTGAAGGCT
CAGATCGCCGCCAACCACAAGGGCATCCAGCTGGTGGCGGAGCTGATCGG
CAGCTATGGATTAGATGTGGTCCAGGCCTACATGTCGCACATCCAAAAGA
ACGCCGAACTGGCGGTTCGGGATATGTTGCGTCAGATTGGCCGGGATACT
TTGGAGCGCACTGGATCGACAGTGCTAGAGGCGAAGGAGTTCATGGACGA
CGGATCACCCATCGCCCTTAAGGTGACCATCGATGCGGAGCAGGGTTCGG
CTCTTTGTGACTTCACCGGATCGGGAGTGGAAGTGTGGGGCAACTGTAAT
GCTCCGCGGGCTATTACCTTGTCCGCCCTAATCTACTGCCTGCGCTGCAT
GGTGGGCCATGATGTGCCACTCAACCAGGGCTGCCTGGCACCCATCCAGG
TGATCATTCCGAAAAACTCCATCCTGGATCCCTCAGAGGGAGCAGCTGTG
GTCGGCGGCAATGTGCAGACATCGCAGCGCATCGTAGACACGGTTCTGAA
GGCTTTCGGAGTTTGTGCCGCCTCGCAAGGATGCATGAACAATATAACTA
TTGGGGATGAGTCTTGGGGTTACTATGAGACTGTGGCCGGAGGAGCTGGT
GCTGGGCCCGGCTGGCATGGAGCCGGCGGAGTGCATACCCACATGACGAA
CACTCGCATCACTGATCCGGAGATCCTTGAACTGCGCTATCCCATGATCC
TGAAGAGATTCTGCCTTCGCACCGATGGCTCCGGCGGAAGAGGTCAGTTC
CACGGAGGCGAGGGTGTGGAGCGGGATCTCCTCTTCCGCAAGCCAGTTAC
CCTGTCCGTCCTGACAGAGAGACGAACTCTGCAGCCCTACGGTCTCGCAG
GTGGAGAATCCGGGAAGAGTGGACGCAATTTGGTGGTGAAACGGGATGGT
CGAGTGATCGCTCTGGCAGGCAAAACCTGCATTGATGTGGAAGCTGGGGA
CACCTTTGCCATGAAAACTCCCGGCGGGGGTGGGTATGGACCAATTGAAG
ACTTTTCCAAGTCCGGTGAATCCTTGAATCAGGAAACCAGCAAACGATAC
GTGGAACGAGGAACTGTCTTTAATTATCTTCAGTGCCAGGAGTCTGCCTA
AAAGCTTTCTAGACCAT
BS29564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4752-RA | 3885 | CG4752-PA | 1..3885 | 17..3901 | 19425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:11:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4752-RA | 3995 | CG4752-RA | 53..3937 | 17..3901 | 19425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22479745..22481519 | 773..2547 | 8875 | 100 | Plus |
| 2R | 25286936 | 2R | 22481585..22482786 | 2548..3749 | 6010 | 100 | Plus |
| 2R | 25286936 | 2R | 22478431..22478875 | 17..461 | 2225 | 100 | Plus |
| 2R | 25286936 | 2R | 22478932..22479244 | 462..774 | 1565 | 100 | Plus |
| 2R | 25286936 | 2R | 22482843..22482996 | 3748..3901 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:11:26 has no hits.
BS29564.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:53 Download gff for
BS29564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4752-RA | 45..3927 | 17..3899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:51 Download gff for
BS29564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4752-RA | 53..3935 | 17..3899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:58 Download gff for
BS29564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4752-RA | 53..3935 | 17..3899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:58 Download gff for
BS29564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22478431..22478875 | 17..461 | 100 | -> | Plus |
| 2R | 22478932..22479244 | 462..774 | 100 | -> | Plus |
| 2R | 22479747..22481519 | 775..2547 | 100 | -> | Plus |
| 2R | 22481585..22482785 | 2548..3748 | 100 | -> | Plus |
| 2R | 22482844..22482994 | 3749..3899 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:51 Download gff for
BS29564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18365936..18366380 | 17..461 | 100 | -> | Plus |
| arm_2R | 18366437..18366749 | 462..774 | 100 | -> | Plus |
| arm_2R | 18367252..18369024 | 775..2547 | 100 | -> | Plus |
| arm_2R | 18369090..18370290 | 2548..3748 | 100 | -> | Plus |
| arm_2R | 18370349..18370499 | 3749..3899 | 100 | | Plus |
BS29564.pep Sequence
Translation from 16 to 3900
> BS29564.pep
MSGTKYCFAIDRGGTFTDVLCICPNGKVRTMKLLSEDPERYSDAPREGIR
RILKEETGEDLAASGLVDTSKIGWVRMGTTVATNALLERKGDPVVLVVNS
GFRDLLYIGNQARPKIFDLNIRKPANLYKSVVEVDCRIVPKQADRCELNH
SWKELEGVAGTKYLEVRPVDEVAVRQALSDARDQGVSSVSVVLAHSYACP
EHELRVGAIARELGFSHVTLSHQAMPMCRVVARGYTACAEAYLTPHVDRY
LASFKSGFDKQLEGVDVLFMQSDGGLTNMENFRGARAILSGPAGGVVGYA
LTGARETELPLIGFDMGGTSTDVSRYAGTYEHVIESTTAGVTIQAPQLDI
NTVAAGGGSRLFFRSGIFVVGPESAGSHPGPACYKKGGPLTVTDANLILG
RILPQYFPKIFGPQENEPLDHEIARSKFVELQAEINNYLKSSGDNRVLSV
EDVALGFIRVANETMCRPIRALTQSRGLDTANHVLSCFGGAGGQHACSIA
RNLGIAKVVVHKYAGILSAYGMALADVVQEFQEPNGLEFSDANAQQLKER
LDALSKQCQDKLSEQGFKRIELEPFLHLRYEGTDGALMVAPSTGKQSSDS
NPLLAAYGDFHATFLERYRTEFGFVLQNRRIIVDDIRIRGLGKNETPPES
KVQAAAEAKPPAEANTRLYFDQGAFDSPIYLTKNLLAGHRITGPAVLIDQ
LSTIVVEPECGIQVTQFGDLIMDVKTGGKHGINADLDPVHLSIFSHRFMS
IAEQMGRVLQRTSISTNIKERLDFSCALFGPDGGLVSNAPHIPVHLGAMQ
ETVQYQLRVRGETLKNGDVILANHPSAGGSHLPDLTVITPVFYETHPRPV
FFVASRGHHADIGGITPGSMPPHSTSLAQEGAAFKSFLIVENGLFQEQQI
IEQLTTPTAAKGAVGTRNLSDNLSDLKAQIAANHKGIQLVAELIGSYGLD
VVQAYMSHIQKNAELAVRDMLRQIGRDTLERTGSTVLEAKEFMDDGSPIA
LKVTIDAEQGSALCDFTGSGVEVWGNCNAPRAITLSALIYCLRCMVGHDV
PLNQGCLAPIQVIIPKNSILDPSEGAAVVGGNVQTSQRIVDTVLKAFGVC
AASQGCMNNITIGDESWGYYETVAGGAGAGPGWHGAGGVHTHMTNTRITD
PEILELRYPMILKRFCLRTDGSGGRGQFHGGEGVERDLLFRKPVTLSVLT
ERRTLQPYGLAGGESGKSGRNLVVKRDGRVIALAGKTCIDVEAGDTFAMK
TPGGGGYGPIEDFSKSGESLNQETSKRYVERGTVFNYLQCQESA*
BS29564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4752-PA | 1294 | CG4752-PA | 1..1294 | 1..1294 | 6704 | 100 | Plus |
