BS29565.complete Sequence
1328 bp assembled on 2012-05-25
GenBank Submission: KX805116
> BS29565.complete
GAAGTTATCAGTCGACATGGCGGCTAAGAAACTGGATGCCATAATCTTCG
GTGCCTCCGGGTTTACCGGAAAGTACACCGTCTTCGAGGCTGTCAGCGTG
CTGAAGGGGCTGCAATGGGGCATCGCCGGACGCAACCAGGAGAAGCTGCA
GTCGGTGCTGCGGGAGATGGGTGCAAAGTCCAAGACAGACCTCTCCCAAA
CGCCGATCGTCATCGCGGACGTGAACAACGAGGCGTCACTGCTAGAGATG
GCCAAACGCTGCCGCATTTTAGTCAATACGGCCGGACCATATCGGTTCTT
CGGCGAGCGAGTGGTCAGGGCTTGCATCGAGGCGGGAACGCATCACGTAG
ACGTAAGCGGAGAGCCACAGTACATGGAAACCATGCAGCTGCGCTACCAT
GATCTCGCCAAGGAGCGTGGCGTGTACGTGATCAGTGCGTGCGGCTTTGA
TTCCATTCCCGCCGACATGGGAGTCACCTTCGTGGAGAAGAACTTCGACG
GCGTGGTCAACTCAGTGGAGAACTTTGTCCATCTGGGCGTCAAGGGAGGT
ACCAAGGGAACGGGCAGTGCTGCACTCAACACCGGCACCTGGGAGAGCGC
CATTCACGCTATCGCCAACCGGAGCGAGTCCGTGGCCATCCGGCGCAAGT
TGTTTCCCGAGCGTCTGCCCAACTTTCATCCGGCTCTTAAGTCACGATCG
CCGCTTTCCCGTGCCGCGGAAGTGGACAACAAGGTGATCCTGCCGTTCCC
TGAAACAGATCGCTCGGTGGTGATGCGCTCGCAGCGTTTCCTTTACGAAC
TGGAGAAGAAGCGACCCGTTCAGATGCAGGCCTACATGACGTATCCCTCA
TGGTTTGCGGCCAGCGTTGTCGTGCTCTTCGCCTCTATCATTGGCATTAT
GGCCAAGTTCTCCTTTGGCCGCCAGCTGCTGCTTAAGTACCCCACCGTCT
TCTCCGGCGGCATGGCTTCCCGCGAGGGTCCCAGTGAGGCGCGGATGGAG
CGCTCCTTCTTCAGAATGACCATGAAGGCCACAGGCTGGCCCAAGTCCGA
AAAACTAGCCGAGACCACCGATCAGTACACCTCTCCGCCCACAAAGACAC
TGACCGTGAGGGTTACGGGTCCCAATCCCGGCTATGGATCCACTTGCGTT
GCACTGCTCTCCACGGCGAAGACCATCCTCAACGAAAGCGACAAGATGCC
CGGATCCGGCGGAGTCCTGCCACCCGGAGCAGCCTTCCGTGGCACCAGTC
TCATCAGCGAGCTGGAGAAGCACGAGCACGGCATTAAGTTTGAAATCGTG
GCCAACAAATAGAAGCTTTCTAGACCAT
BS29565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5167-RA | 1296 | CG5167-PA | 1..1296 | 17..1312 | 6450 | 99.8 | Plus |
| CG2604-RB | 1293 | CG2604-PB | 15..509 | 31..525 | 810 | 77.6 | Plus |
| CG2604-RC | 1293 | CG2604-PC | 15..509 | 31..525 | 810 | 77.6 | Plus |
| CG2604-RB | 1293 | CG2604-PB | 742..1289 | 761..1308 | 310 | 70.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5167-RA | 1576 | CG5167-RA | 193..1488 | 17..1312 | 6450 | 99.8 | Plus |
| CG2604-RB | 1636 | CG2604-RB | 151..645 | 31..525 | 810 | 77.6 | Plus |
| CG2604-RC | 1631 | CG2604-RC | 146..640 | 31..525 | 810 | 77.6 | Plus |
| CG2604-RB | 1636 | CG2604-RB | 878..1425 | 761..1308 | 310 | 70.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12406724..12408019 | 17..1312 | 6450 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5222623..5223117 | 525..31 | 810 | 77.6 | Minus |
| 3R | 32079331 | 3R | 5221843..5222390 | 1308..761 | 310 | 70.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:30:17 has no hits.
BS29565.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:28 Download gff for
BS29565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5167-RA | 193..1482 | 17..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:14 Download gff for
BS29565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5167-RA | 193..1482 | 17..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:14 Download gff for
BS29565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5167-RA | 193..1482 | 17..1306 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:14 Download gff for
BS29565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12406724..12408013 | 17..1306 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:14 Download gff for
BS29565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8232446..8233735 | 17..1306 | 99 | | Plus |
BS29565.pep Sequence
Translation from 16 to 1311
> BS29565.pep
MAAKKLDAIIFGASGFTGKYTVFEAVSVLKGLQWGIAGRNQEKLQSVLRE
MGAKSKTDLSQTPIVIADVNNEASLLEMAKRCRILVNTAGPYRFFGERVV
RACIEAGTHHVDVSGEPQYMETMQLRYHDLAKERGVYVISACGFDSIPAD
MGVTFVEKNFDGVVNSVENFVHLGVKGGTKGTGSAALNTGTWESAIHAIA
NRSESVAIRRKLFPERLPNFHPALKSRSPLSRAAEVDNKVILPFPETDRS
VVMRSQRFLYELEKKRPVQMQAYMTYPSWFAASVVVLFASIIGIMAKFSF
GRQLLLKYPTVFSGGMASREGPSEARMERSFFRMTMKATGWPKSEKLAET
TDQYTSPPTKTLTVRVTGPNPGYGSTCVALLSTAKTILNESDKMPGSGGV
LPPGAAFRGTSLISELEKHEHGIKFEIVANK*
BS29565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5167-PA | 431 | CG5167-PA | 1..431 | 1..431 | 2208 | 100 | Plus |
| CG2604-PB | 430 | CG2604-PB | 1..430 | 1..431 | 1604 | 70.1 | Plus |
| CG2604-PC | 430 | CG2604-PC | 1..430 | 1..431 | 1604 | 70.1 | Plus |
| CG2604-PA | 430 | CG2604-PA | 1..430 | 1..431 | 1604 | 70.1 | Plus |
