BS29567.complete Sequence
1361 bp assembled on 2012-05-25
GenBank Submission: KX801379
> BS29567.complete
GAAGTTATCAGTCGACATGACGAAGGACCAGCAGGCGACACCCATTCCCG
AGGAGTTGTACAATCTCACCCAGCTGGCCGAGGTTACTCTGTCCGTTGGT
CCTCTGGTCACGGACGAGGTGAAGCCACTGCCACTGTACGCCTCCTCGGA
CGACGACTCCAACTACTACAGCCACAAGGTCTTCGATCGCAGGAAACTGC
GTCGTTGCACAATCTCCGACTCGAATTCCTGCGCCAGCAGCAGTTCCAGT
TCCACCTCCAGCCGTCAATCCTCGGAGGACCACCTGGGACTCCAGGGGCA
CTCATCGGTGCACCACCATCATGGGGAGCAGGGCGAAATCCTCAACAGCA
CTTCGTTGCTGGAGGACGAGCACATCTGTCCCGAGTGCGGAAAGAAATAC
TCCACATCCTCCAACCTAGCACGTCATAGACAAACGCACAGATCAATCAT
GGATAAGAAAGCGCGTCACTGTCCTTATTGCGAGAAGGTGTACGTTTCGA
TGCCCGCCTACTCGATGCATGTGCGCACCCACAATCAGGGATGCGAGTGT
CAGTTCTGCGGCAAGCGCTTCTCAAGGCCCTGGCTCCTCCAGGGCCACAT
CCGCACCCACACAGGCGAAAAGCCCTTCAAGTGCGGCGTCTGCGAGAAGG
CGTTCGCCGACAAGAGCAACCTGCGCGCCCACATCCAGACCCACTCGAAC
ACCAAGCCACACACATGTGCGCGATGCGGCAAGGCCTTCGCTCTCAAGTC
CTACCTGTACAAGCACGAGGAGTCATCGTGCATGAAGAATCGAGGAGGCG
TTCCGGGATCGGGAGCAGCATCCGGCAACCGACCTCCCTCGTCGCCAAAA
AGGCAACAGGCGGAGGTAACAAGCGGCACCATCTCGGCATTGGCTCCTGG
ATCACCTGCCGCGGCAGTGTGTGCTGCCTCCGATTCAGCCAAGTCTACGC
TGGCCAACAAGCTGTTGCAGAAGGAAAAGGATCGCAGGCAGGCGGCCATG
GCCTTCCAGGGCTTTCCGGCTGGGCCAGAAGTGACGGCTTACAGCCACGC
AACTTCGGCCCAGGAGGAATATGAGAAGTTCAAGCGGATCAACGTGATTC
AGCCGAAAGTGATGCCGCATAGGGTACCCAGCCTGTACCAGGACCTGCTC
CCCAATCGCCACGTGCCACTGGCCCTGCCTTTGGCGATGCCGTATCACTT
TCAGGGCCAGGCCACGTCCACGGGCCAATCGGATCCCACCTCCGTGCAGG
AGCAGCCCGTTGACTTTTCGCCCAAGAACAACTTCACGCACTCGGCCAAG
ACGAGTCCCTTCGAGCTGACCGGGAATTACGCCATGGTGGCATAGAAGCT
TTCTAGACCAT
BS29567.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kah-RA | 1329 | CG17181-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
| sna-RA | 1173 | CG3956-PA | 888..1008 | 514..634 | 215 | 78.5 | Plus |
| CG12605-RE | 1860 | CG12605-PE | 1499..1641 | 555..697 | 205 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kah-RA | 2825 | CG17181-RA | 337..1665 | 17..1345 | 6645 | 100 | Plus |
| sna-RA | 1668 | CG3956-RA | 1041..1161 | 514..634 | 215 | 78.5 | Plus |
| CG12605-RE | 2770 | CG12605-RE | 2273..2415 | 555..697 | 205 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 584479..584958 | 919..440 | 2400 | 100 | Minus |
| 3L | 28110227 | 3L | 583984..584410 | 1345..919 | 2135 | 100 | Minus |
| 3L | 28110227 | 3L | 585017..585441 | 441..17 | 2125 | 100 | Minus |
| 2L | 23513712 | 2L | 15477100..15477220 | 634..514 | 215 | 78.5 | Minus |
| 3L | 28110227 | 3L | 3958746..3958888 | 697..555 | 205 | 76.2 | Minus |
| 2L | 23513712 | 2L | 15424066..15424153 | 629..542 | 185 | 80.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:30:24 has no hits.
BS29567.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:29 Download gff for
BS29567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17181-RA | 335..1663 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:18 Download gff for
BS29567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17181-RA | 337..1665 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:17 Download gff for
BS29567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kah-RA | 337..1665 | 17..1345 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:17 Download gff for
BS29567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 583984..584409 | 920..1345 | 100 | <- | Minus |
| 3L | 584479..584956 | 442..919 | 100 | <- | Minus |
| 3L | 585017..585441 | 17..441 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:18 Download gff for
BS29567.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 583984..584409 | 920..1345 | 100 | <- | Minus |
| arm_3L | 584479..584956 | 442..919 | 100 | <- | Minus |
| arm_3L | 585017..585441 | 17..441 | 100 | | Minus |
BS29567.pep Sequence
Translation from 16 to 1344
> BS29567.pep
MTKDQQATPIPEELYNLTQLAEVTLSVGPLVTDEVKPLPLYASSDDDSNY
YSHKVFDRRKLRRCTISDSNSCASSSSSSTSSRQSSEDHLGLQGHSSVHH
HHGEQGEILNSTSLLEDEHICPECGKKYSTSSNLARHRQTHRSIMDKKAR
HCPYCEKVYVSMPAYSMHVRTHNQGCECQFCGKRFSRPWLLQGHIRTHTG
EKPFKCGVCEKAFADKSNLRAHIQTHSNTKPHTCARCGKAFALKSYLYKH
EESSCMKNRGGVPGSGAASGNRPPSSPKRQQAEVTSGTISALAPGSPAAA
VCAASDSAKSTLANKLLQKEKDRRQAAMAFQGFPAGPEVTAYSHATSAQE
EYEKFKRINVIQPKVMPHRVPSLYQDLLPNRHVPLALPLAMPYHFQGQAT
STGQSDPTSVQEQPVDFSPKNNFTHSAKTSPFELTGNYAMVA*
BS29567.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kah-PA | 442 | CG17181-PA | 1..442 | 1..442 | 2355 | 100 | Plus |
| CG12605-PC | 474 | CG12605-PC | 255..437 | 73..262 | 505 | 51.1 | Plus |
| CG12605-PE | 619 | CG12605-PE | 400..582 | 73..262 | 505 | 51.1 | Plus |
| CG12605-PD | 619 | CG12605-PD | 400..582 | 73..262 | 505 | 51.1 | Plus |
| CG12605-PA | 619 | CG12605-PA | 400..582 | 73..262 | 505 | 51.1 | Plus |
