Clone BS29569 Report

Search the DGRC for BS29569

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:295
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptTfb4-RA
Protein status:BS29569.pep: full length peptide match
Sequenced Size:932

Clone Sequence Records

BS29569.complete Sequence

932 bp assembled on 2012-05-25

GenBank Submission: KX802707

> BS29569.complete
GAAGTTATCAGTCGACATGGAAGCAGATCAAGCAGCAAGCAAGGAAGCCG
AATCATGCATCGACCTCTTGGTGATCGTCCTGGACACGAACCCCTCCCAG
CACTTCGTGCGCCAGAACCCACAGAACCTCACGCAAATCCTGGAGGCGGT
GATTGCCTTTGGGAATGCTCACCTGATGCAGAAGGCCCAGAACAAACTGG
CTGTGGTATCCTGCTCCCACCATGCCACAAACTTCCTGTATCCGCTGCCC
AGAAGACAAGTGGAACTGCGCCAAGTGGATGGGCAGTACGAGGCGTTTAA
TCTGGTGGAGAAGACGGTGAAGCAGCAGCTGGGCAGCATCCTGATGAACG
CACCACGGCTCAGCGCTCCTTGTGAGAGTCTCCTGGCCGGCAGCATGTCC
ATGGCGCTGTGCTACATATCAAGGCTCCAGAGGAATCTGGCTCCTGGCGT
CAAGATGCATTCCCGCATCCTGGTCGTCACAGGCAGCAACGAGTGCGCCT
CGCAGTACATGACGTTCATGAACGTCTTCTTCACCGCCCAGAAACTGGGC
ATCACGATCGATACCTGCGCCCTGGACAAGACCCTCAGTTTGCTACAGCA
AGGCTGTGACATTACCTCCGGACAGTTCCTCAAGGTCACCCAGCTGGACG
GCCTGCTGCAGTACCTCCTGTGGGTCTTCCTGCCCGCCCCGCAGATCCGT
CACAAATTGGTCCTGCCGCCACCGCCCAAAGTGGACTACCGCGCCTCCTG
CTTCTGCCATCGTGAGCTGATCGACATTGGCTACGTCTGCTCGGTTTGCC
TCTCGGTCTTCTGCAAATACAGTCCCATATGCACCACTTGCCACACCATT
TTCAAGAATCCCGGTCCTCTGCCCATCAAGGGCAAAAAGAAAAAGAAGAC
CGACAAGCAAATGTAAAAGCTTTCTAGACCAT

BS29569.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb4-RA 900 CG5041-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:30
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb4-RA 999 CG5041-RA 31..930 17..916 4500 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1149651..1150070 843..424 2100 100 Minus
2L 23513712 2L 1150131..1150326 424..229 980 100 Minus
2L 23513712 2L 1150379..1150561 228..46 915 100 Minus
2L 23513712 2L 1149514..1149586 916..844 365 100 Minus
Blast to na_te.dros performed 2014-11-28 11:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 382..428 885..931 109 70.2 Plus

BS29569.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:30 Download gff for BS29569.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb4-RA 27..924 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:21 Download gff for BS29569.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb4-RA 31..928 17..914 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:19 Download gff for BS29569.complete
Subject Subject Range Query Range Percent Splice Strand
Tfb4-RA 31..928 17..914 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:19 Download gff for BS29569.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1149516..1149586 844..914 100 <- Minus
2L 1149651..1150069 425..843 100 <- Minus
2L 1150131..1150326 229..424 100 <- Minus
2L 1150379..1150559 48..228 100 <- Minus
2L 1150617..1150647 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:21 Download gff for BS29569.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1149516..1149586 844..914 100 <- Minus
arm_2L 1149651..1150069 425..843 100 <- Minus
arm_2L 1150131..1150326 229..424 100 <- Minus
arm_2L 1150379..1150559 48..228 100 <- Minus
arm_2L 1150617..1150647 17..47 100   Minus

BS29569.pep Sequence

Translation from 16 to 915

> BS29569.pep
MEADQAASKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGN
AHLMQKAQNKLAVVSCSHHATNFLYPLPRRQVELRQVDGQYEAFNLVEKT
VKQQLGSILMNAPRLSAPCESLLAGSMSMALCYISRLQRNLAPGVKMHSR
ILVVTGSNECASQYMTFMNVFFTAQKLGITIDTCALDKTLSLLQQGCDIT
SGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPPPPKVDYRASCFCHRE
LIDIGYVCSVCLSVFCKYSPICTTCHTIFKNPGPLPIKGKKKKKTDKQM*

BS29569.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
Tfb4-PA 299 CG5041-PA 1..299 1..299 1564 100 Plus