BS29575.complete Sequence
1187 bp assembled on 2012-05-25
GenBank Submission: KX803883
> BS29575.complete
GAAGTTATCAGTCGACATGAACTACAACGCCAAGCGAGTAATGCGACAGA
ACTCGGTTTGCGTGGGTTCCAACGACATGGCAGCGTCGCCGATAATGATT
GGACCTGCCCCGCCCTCGGCGCCCAGCACGCCGCAACTGCAGACCACCGA
GGACATCAAGCCACTGCTTGTGCAGCGCCAAGTGATTCTGCTGCAAAGTG
GAAGCATACCGACGAATCCCTCGCCACAGCAGATCAACCTAGCTGGACAT
AATGTAGCCGGTGGTGCCAGCGGGAGCAACGTTGCCAACGTTCTCATTCC
GGATGATGCACCTGTCTCACTGCTCACAGAGATTGCGGATATCATGCGAA
GCTTCGGCGACAGCGATCAGCCCAGGACGGGAAGTGTCAAGCTGGTGGAG
CAGATCCTGCAGCAGCAGCTGCGCGGCATCTTCAATGAGGCTTCGCTGGT
GGCCATGCGGCGGAAACAGAATCCCTGCCCGTCGCAGGCGGACTTTGAGT
TCCTGATGCGCAACCATCCGGTGAAGATAGCTCGGATGCGAAAGCACCTC
AAGGATATGCGCATACTCAAAAGGTTCCTTAGTATCCGCACGGGAAGGCC
GCAGGACTTCATGGACGACTTGGAGCAGCAGGAGGAGGACGAGGAGCTGG
CCATCGATGTGTACGAGCTACACGACGAGGACCGAATGCGAAGATTATTC
CGCGCAGATCGGATATCGCAGATCCTTACGGGCCAGCAATACCTGGAGTT
CAATGAGGCGCGCAAGACGTCATTCTACTGCCGCCATGGGGAGAAGATCA
AGAACAAGTTCCGCCGCTTTCTGGACCTGCCCGCGGACCTTCGCATCCCA
ACGCCGACAATGAACATTTTGGCCTATCTGGCGCATGAGACCATTGCCGC
CATTGTCGACTATTCGATCCTGACGCGCCTGAACTCGGACAACCGTGCGA
CCGAGCCCTACAGCCGAGTGACCTCCGCCGGAGGCAGTCCGGCTATGATG
CACGTCTGTCCGGAGGTCACACAGGGTCGCGGCATGGAGGTGGTCAAGCC
AATCAGTGTACCGGAGATCCACGAGGCCATGCGCCGTTTCCGGCAAATGA
GCAGCCGTAAGATTGGGCGGTATCGCAACTCTTGCGACATCGATTTCCGG
CGCAGTTTTCTAGCCATTTAAAAGCTTTCTAGACCAT
BS29575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt3-RA | 1155 | CG3169-PA | 1..1155 | 17..1171 | 5775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt3-RA | 1395 | CG3169-RA | 71..1225 | 17..1171 | 5775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12017226..12018380 | 17..1171 | 5775 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 11:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 4406..4443 | 382..419 | 118 | 78.9 | Plus |
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6564..6727 | 659..816 | 111 | 58.1 | Plus |
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 55..157 | 717..816 | 110 | 60.2 | Plus |
BS29575.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:31 Download gff for
BS29575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt3-RA | 127..1279 | 17..1169 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:25 Download gff for
BS29575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt3-RA | 71..1223 | 17..1169 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:22 Download gff for
BS29575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt3-RA | 71..1223 | 17..1169 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:22 Download gff for
BS29575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12017226..12018378 | 17..1169 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:25 Download gff for
BS29575.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7842948..7844100 | 17..1169 | 100 | | Plus |
BS29575.pep Sequence
Translation from 16 to 1170
> BS29575.pep
MNYNAKRVMRQNSVCVGSNDMAASPIMIGPAPPSAPSTPQLQTTEDIKPL
LVQRQVILLQSGSIPTNPSPQQINLAGHNVAGGASGSNVANVLIPDDAPV
SLLTEIADIMRSFGDSDQPRTGSVKLVEQILQQQLRGIFNEASLVAMRRK
QNPCPSQADFEFLMRNHPVKIARMRKHLKDMRILKRFLSIRTGRPQDFMD
DLEQQEEDEELAIDVYELHDEDRMRRLFRADRISQILTGQQYLEFNEARK
TSFYCRHGEKIKNKFRRFLDLPADLRIPTPTMNILAYLAHETIAAIVDYS
ILTRLNSDNRATEPYSRVTSAGGSPAMMHVCPEVTQGRGMEVVKPISVPE
IHEAMRRFRQMSSRKIGRYRNSCDIDFRRSFLAI*
BS29575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt3-PA | 384 | CG3169-PA | 1..384 | 1..384 | 1966 | 100 | Plus |
