BS29577.complete Sequence
1208 bp assembled on 2012-05-25
GenBank Submission: KX805841
> BS29577.complete
GAAGTTATCAGTCGACATGCTTTCCATGCAAGAGCTAATGGATATGCGGA
TGCAGCAGCAGCTGGCCCACGAGATCTACCGCCAGCAGATCATGCAGCGG
ATTCCAGATCCCTTTCCATCGATGTTACCTTTCAACATGCCCCACCAGCA
GCCGCACATGATGCTGCCCAGTCGTCCCACCCTGCCCGGCGTGGAGGCCA
AGTTGGAGAACAACGATTTGTGGCAACAGTTCCATAAAATCGGCACCGAG
ATGATCATCACAAAGAGCGGCCGACGCATGTTCCCCTCGATGCGAGTTTC
CCTCAGCGGACTGGAGGAGGAGGCCAGCTATTGCGTACTCCTCGAGATGG
TGCCCATTGGCGATTGCCGCTACAAGTTCTCCGGTTCCCAGTGGGTTCCG
GCCGGAGGAGCCGAGCCCCAGAGTCCGCAGCGCATGTATCTGCATCCGGA
CAGTCCGGCGACCGGTGCCCATTGGCAATCCCAGGCATTGCTCTTCAACA
AGGTCAAACTGACCAACAATACACTGGACAGCAGCGGACATATCGTTTTG
GCCAGCATGCATAAGTACCAGCCACGCCTGCACATCATCCGCAGCAGCGA
GCTCACCCAACTTCCATGGGCTCCTCAGCAGGCGTTCGTTTTCCCGGAGA
CGGAGTTCGTAGCTGTCACAGCCTATCAGAACGATCGCATCACCAAATTG
AAGATCGATAACAATCCGTTCGCTAAGGGTTTCCGCGAGTCGGGTCAATC
CCGCTGCAAAAGGAAGCTGAACAGCAGCGGAAACTCGACGCTGGAGTCGG
AGGATGATGGCTCCAGTGTGAGCAGCTGCGATTCTCCGCAGGCGAAGCGC
CAGCGCCAGGATTTTGAGCAGGACTCAACGGGTAGTGTTTCGCCAGCTTA
CTATGGAGCAACTCATCCAGTTGCCAATCCTATGTCGCCGTATCTCCGCC
ATCACTTGAGCTATGGACCCAGTGGAGCTGCCGGATTGCCGCCCAGCATT
GCAGCTGCCTATTTTGGTGGAGTTCCTCCGCAGATTCTGCCAATGCCACC
AGCCACATATGCGCCAACTGTCGCGCCTGTTAGTCCTGTGGCCTCGCAAC
CCGTTGGCTCCAGCACACCCACAACATCACCAAGGCCTTCAACCTCAACG
AAAAGAAATAGCTTCAGCATTTCAGCCATTTTGGCCTATTGAAAGCTTTC
TAGACCAT
BS29577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc1-RA | 1176 | CG5133-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| Doc1-RB | 1071 | CG5133-PB | 1..1071 | 122..1192 | 5355 | 100 | Plus |
| Doc3-RA | 1275 | CG5093-PA | 175..750 | 191..766 | 1500 | 84 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc1-RA | 1526 | CG5133-RA | 161..1344 | 12..1195 | 5905 | 99.9 | Plus |
| Doc1-RB | 1339 | CG5133-RB | 68..1157 | 106..1195 | 5450 | 100 | Plus |
| Doc3-RA | 1671 | CG5093-RA | 297..872 | 191..766 | 1500 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9044342..9044860 | 677..1195 | 2595 | 100 | Plus |
| 3L | 28110227 | 3L | 9043387..9043655 | 273..541 | 1345 | 100 | Plus |
| 3L | 28110227 | 3L | 9005774..9006029 | 273..528 | 860 | 89.1 | Plus |
| 3L | 28110227 | 3L | 9042027..9042198 | 102..273 | 860 | 100 | Plus |
| 3L | 28110227 | 3L | 9014708..9014976 | 541..273 | 700 | 84 | Minus |
| 3L | 28110227 | 3L | 9043724..9043861 | 542..679 | 690 | 100 | Plus |
| 3L | 28110227 | 3L | 9041535..9041630 | 12..107 | 465 | 99 | Plus |
| 3L | 28110227 | 3L | 9013541..9013624 | 760..677 | 270 | 88.1 | Minus |
| 3L | 28110227 | 3L | 9005554..9005634 | 191..271 | 240 | 86.4 | Plus |
| 3L | 28110227 | 3L | 9006159..9006296 | 542..679 | 225 | 77.5 | Plus |
| 3L | 28110227 | 3L | 9018801..9018884 | 107..24 | 225 | 84.5 | Minus |
| 3L | 28110227 | 3L | 9014492..9014622 | 679..549 | 220 | 77.9 | Minus |
| 3L | 28110227 | 3L | 9006361..9006450 | 677..766 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:30:39 has no hits.
BS29577.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:32 Download gff for
BS29577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc1-RA | 164..1338 | 17..1191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:28 Download gff for
BS29577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc1-RA | 166..1340 | 17..1191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:23 Download gff for
BS29577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doc1-RA | 166..1340 | 17..1191 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:23 Download gff for
BS29577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9042033..9042198 | 108..273 | 100 | -> | Plus |
| 3L | 9043388..9043655 | 274..541 | 100 | -> | Plus |
| 3L | 9043724..9043861 | 542..679 | 100 | -> | Plus |
| 3L | 9041540..9041630 | 17..107 | 100 | -> | Plus |
| 3L | 9044345..9044856 | 680..1191 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:28 Download gff for
BS29577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9034640..9034730 | 17..107 | 100 | -> | Plus |
| arm_3L | 9035133..9035298 | 108..273 | 100 | -> | Plus |
| arm_3L | 9036488..9036755 | 274..541 | 100 | -> | Plus |
| arm_3L | 9036824..9036961 | 542..679 | 100 | -> | Plus |
| arm_3L | 9037445..9037956 | 680..1191 | 100 | | Plus |
BS29577.pep Sequence
Translation from 16 to 1191
> BS29577.pep
MLSMQELMDMRMQQQLAHEIYRQQIMQRIPDPFPSMLPFNMPHQQPHMML
PSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRRMFPSMRVSLSGLE
EEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATG
AHWQSQALLFNKVKLTNNTLDSSGHIVLASMHKYQPRLHIIRSSELTQLP
WAPQQAFVFPETEFVAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRK
LNSSGNSTLESEDDGSSVSSCDSPQAKRQRQDFEQDSTGSVSPAYYGATH
PVANPMSPYLRHHLSYGPSGAAGLPPSIAAAYFGGVPPQILPMPPATYAP
TVAPVSPVASQPVGSSTPTTSPRPSTSTKRNSFSISAILAY*
BS29577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc1-PA | 391 | CG5133-PA | 1..391 | 1..391 | 2063 | 100 | Plus |
| Doc1-PB | 356 | CG5133-PB | 1..356 | 36..391 | 1883 | 100 | Plus |
| Doc2-PA | 469 | CG5187-PA | 1..465 | 1..389 | 1177 | 54.7 | Plus |
| Doc3-PA | 424 | CG5093-PA | 1..418 | 1..389 | 1161 | 59.4 | Plus |
| bi-PE | 970 | CG3578-PE | 305..545 | 43..276 | 621 | 48.5 | Plus |
