BS29581.complete Sequence
1952 bp assembled on 2012-06-18
GenBank Submission: KX801536
> BS29581.complete
GAAGTTATCAGTCGACATGAATTCCAAATCCGATTATGAAGCAGAAAAAG
AAAAAAAGCTGACCATAACAAATAGATTCGGGGACTCCCTGGAAAACTAT
GAACTATCCAACGAGAGCGAGCACAAGACCCATGTATACCCGAAAAAGAT
TCCTAACAGAAAAAACGGAATTTTAAAAAACACCGATGCCAACCATAGTG
CCGTCGATAATCAACATCTTGAGGATGTGGATTTGGCAGACATTTTGGGC
ACAAATTGGCCAAAACGAGCGGGACCAGCTGCAATGATCTTAAACAACAA
AAGTAAAACGGATCCTAGTAATTCTGTAGACTTAATTTTAAAACCAGCCT
CACCCATATTAAAAATAGAGCCGGAGGAACCTTTACGTTTTACAATCGCT
GATTATCAACCTCTGATTGAAATACCTGGAACCGAGCTAGCGATTGGTTC
CCTCGTCGAAGTCTCGAATCCTGGAGTATGTGAAGATCTATATGGCGTTG
TGAGATGGATAGGTATACCGCCTGGCCCGCAAAAAAACGTACTCGTCGGA
ATCGAGGTAGAAGACGAATCCAACTTGAAAAATGTAGTGGCATCGGATGG
GAGACACAATGGCGTACGCTTATTTACTTGCCATGATGGTCGAGCTATTT
TTGTACCAGCCAACAGATGCACCGCTGACCGGCGATTTGCTGATGTAGAT
AATAGCATTTCTGCAAACAGAGTTTCTAGTAATCACGCAAAGAAATTTGG
CGTCGCTGACTGTCCTGCCATATATGGCTCGATACCACCATTACAAATAC
ACAATTCCGATGAGCTTGCTAGCATATGTGGAAAGTTCAAAGGAATACAA
GGACACCATAATTCCTGCTACCTTGATGCAACTCTATTTTCCATGTTCAC
TTTCACCAGTGTTTTCGATTCAATTCTGTACAGACGTCCGGGCCCACAAG
ATATTCGAAATTACAGTGAGGTTCAAAAGGTTCTGCGCGATGAGATCGTC
AATCCATTGCGAAAAAACGTTTTCGTTCGATCCGATCGTGTGATGAAACT
GCGCGAGCTCCTAGATCAGCTAAGTTCGGTCAGCGGTCTCACCTGCGAGG
AAAAGGATCCTGAAGAGTTCCTAAATAGTTTGCTCTCACAAATAATGCGA
GTTGAACCGTTTCTAAAGCTAAGCTCGGGGCAAGATTCTTATTTTTACCA
ACTCTTTGTGGAGAAGGATGAGAAGTTAACATTACCGAGTGTGCAACAAT
TGTTTGAGCAAAGCTTTCACTCATCGGATATAAAACTAAAGGAGGTTCCT
TCTTGTTTCATCATTCAAATGCCTCGTTTCGGAAAGAACTACAAGATGTA
TCCAAGGATATTGCCATCGCAGGTTCTTGATGTCACAGACATAATTGAAA
ATTCTCCTCGACAGTGCTCACTTTGTGGCAAACTAGCTGAATACGAGTGC
CGGGATTGCTTTGGCAGCTTGCAGGCTGGATCAGGACTGGAATGCACCGC
CTTTTGTCCAAAATGTCTCAAGACATTTCACAGTCACATCAAAAGAACGA
ATCATGTGTCGAAGAAGATTTATAGTCCGAAGGAATTTAAAATCATGGCC
GAGCACATGGTTGTCCCGCGATTGTACATGGAGTTATTTGCAGTCGTTTG
CATAGAAACATCTCACTACGTGGCATTTGTCAAGTCTGGATCCGGACCAG
ATGCTCCATGGTGTTTCTTCGATTCAATGGCTGATCGAAAAGGCGAACAG
AATGGATACAATATACCTGAAATTACGTGTGTTCCAGAATTAACACAGTG
GCTCTCGGAAGAAGGCGCACGATCTATAAATGAAACTTCAACGAACGATA
AAGTATTACCTGAACACGCCAAGCGTATTTTTTGCGATGCCTATATGTGT
CTGTACCAAAGCACAGATATAATGATGTACCATTAGAAGCTTTCTAGACC
AT
BS29581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CYLD-RE | 1920 | CG5603-PE | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CYLD-RD | 1920 | CG5603-PD | 1..1920 | 17..1936 | 9600 | 100 | Plus |
| CYLD-RB | 1656 | CG5603-PB | 107..1656 | 387..1936 | 7750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CYLD-RE | 2073 | CG5603-RE | 103..2023 | 17..1937 | 9605 | 100 | Plus |
| CYLD-RD | 2095 | CG5603-RD | 118..2038 | 17..1937 | 9605 | 100 | Plus |
| CYLD-RB | 1846 | CG5603-RB | 246..1796 | 387..1937 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10296625..10296861 | 1403..1167 | 1185 | 100 | Minus |
| 2L | 23513712 | 2L | 10297705..10297936 | 618..387 | 1160 | 100 | Minus |
| 2L | 23513712 | 2L | 10296938..10297160 | 1168..946 | 1100 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10298779..10298997 | 388..170 | 1065 | 99.1 | Minus |
| 2L | 23513712 | 2L | 10296170..10296370 | 1744..1544 | 1005 | 100 | Minus |
| 2L | 23513712 | 2L | 10295916..10296112 | 1937..1741 | 985 | 100 | Minus |
| 2L | 23513712 | 2L | 10297431..10297607 | 794..618 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 10299044..10299204 | 177..17 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 10297215..10297370 | 950..795 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 10296424..10296565 | 1545..1404 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:36:00 has no hits.
BS29581.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 13:51:07 Download gff for
BS29581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CYLD-RE | 83..2002 | 17..1936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:55 Download gff for
BS29581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CYLD-RD | 118..2037 | 17..1936 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:29 Download gff for
BS29581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CYLD-RD | 118..2037 | 17..1936 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:29 Download gff for
BS29581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10296938..10297156 | 950..1168 | 100 | <- | Minus |
| 2L | 10297216..10297370 | 795..949 | 100 | <- | Minus |
| 2L | 10297431..10297606 | 619..794 | 100 | <- | Minus |
| 2L | 10297705..10297936 | 387..618 | 100 | <- | Minus |
| 2L | 10298781..10298989 | 178..386 | 100 | <- | Minus |
| 2L | 10299044..10299204 | 17..177 | 100 | | Minus |
| 2L | 10295917..10296110 | 1743..1936 | 100 | <- | Minus |
| 2L | 10296172..10296368 | 1546..1742 | 100 | <- | Minus |
| 2L | 10296424..10296565 | 1404..1545 | 100 | <- | Minus |
| 2L | 10296625..10296859 | 1169..1403 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:55 Download gff for
BS29581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10297705..10297936 | 387..618 | 100 | <- | Minus |
| arm_2L | 10298781..10298989 | 178..386 | 100 | <- | Minus |
| arm_2L | 10296172..10296368 | 1546..1742 | 100 | <- | Minus |
| arm_2L | 10296424..10296565 | 1404..1545 | 100 | <- | Minus |
| arm_2L | 10296625..10296859 | 1169..1403 | 100 | <- | Minus |
| arm_2L | 10296938..10297156 | 950..1168 | 100 | <- | Minus |
| arm_2L | 10297216..10297370 | 795..949 | 100 | <- | Minus |
| arm_2L | 10295917..10296110 | 1743..1936 | 100 | <- | Minus |
| arm_2L | 10297431..10297606 | 619..794 | 100 | <- | Minus |
| arm_2L | 10299044..10299204 | 17..177 | 100 | | Minus |
BS29581.pep Sequence
Translation from 16 to 1935
> BS29581.pep
MNSKSDYEAEKEKKLTITNRFGDSLENYELSNESEHKTHVYPKKIPNRKN
GILKNTDANHSAVDNQHLEDVDLADILGTNWPKRAGPAAMILNNKSKTDP
SNSVDLILKPASPILKIEPEEPLRFTIADYQPLIEIPGTELAIGSLVEVS
NPGVCEDLYGVVRWIGIPPGPQKNVLVGIEVEDESNLKNVVASDGRHNGV
RLFTCHDGRAIFVPANRCTADRRFADVDNSISANRVSSNHAKKFGVADCP
AIYGSIPPLQIHNSDELASICGKFKGIQGHHNSCYLDATLFSMFTFTSVF
DSILYRRPGPQDIRNYSEVQKVLRDEIVNPLRKNVFVRSDRVMKLRELLD
QLSSVSGLTCEEKDPEEFLNSLLSQIMRVEPFLKLSSGQDSYFYQLFVEK
DEKLTLPSVQQLFEQSFHSSDIKLKEVPSCFIIQMPRFGKNYKMYPRILP
SQVLDVTDIIENSPRQCSLCGKLAEYECRDCFGSLQAGSGLECTAFCPKC
LKTFHSHIKRTNHVSKKIYSPKEFKIMAEHMVVPRLYMELFAVVCIETSH
YVAFVKSGSGPDAPWCFFDSMADRKGEQNGYNIPEITCVPELTQWLSEEG
ARSINETSTNDKVLPEHAKRIFCDAYMCLYQSTDIMMYH*
BS29581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CYLD-PE | 639 | CG5603-PE | 1..639 | 1..639 | 3380 | 100 | Plus |
| CYLD-PD | 639 | CG5603-PD | 1..639 | 1..639 | 3380 | 100 | Plus |
| CYLD-PB | 551 | CG5603-PB | 10..551 | 96..639 | 2746 | 96.7 | Plus |
