Clone BS29587 Report

Search the DGRC for BS29587

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:295
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG11275-RA
Protein status:BS29587.pep: full length peptide match
Sequenced Size:1286

Clone Sequence Records

BS29587.complete Sequence

1286 bp assembled on 2012-05-25

GenBank Submission: KX801156

> BS29587.complete
GAAGTTATCAGTCGACATGAGCATCTCGGCGGTGGATCGCAAAGAGCCGG
GCAGTGTGAGCAGCGGTCTGGGTAGGCGATACGGGCAGCTGCTCCGTGGA
GCCAAGTACACAGATTGCGTGTTCCACGTGTGCGAGGAGCAAGTGAAATG
CCACAAGCTCATCCTGAGCTCCGCCAGTCCCGTTTTCGAGGCAATGTTCT
TTGGTCCCATGCAAAACAACGAGCCCGAGCCGGAAATCGAAATCCACGAC
ATAAGCTCTGCCATCTTCAAGGTGCTGGTGGAGTACATCTACACGGGCGT
CGTTGACTACAATGGCCTGGAGCTGGTGGCCTGCATTGAGCTGTACTACG
CCGCTGAGAAGTATCTGCTGGAGGAGCTGATCGCCGACACGCTGATGGTT
ATCACCCGCAAGCTGCGATTTGCCAATATCTTGCCCGCTCTAGAGCTAAG
TGTTTGCATGGGCCTCGACGGGTTGCTGGAGGTCTGCATGACCTTTTTCA
TGCGATGCTGTGTTAATAATGGACAGTATATGAGCCACCTTAAGGAGCAC
TATGTGCACGTGTCCAAGGAGTGTGTGAAGGCCATAATAGCGGCGTGCAA
GGAACCGCACAAGTTACTCATCTGGTATGTTTATGAGTGGACACGACAGG
AGTGCGAGCAGTTGGGTCTGGGTCCCAGCGATGCCGACTTAGTAGTGCAC
GACTTGGGTGGCAAAACAAGCGACTGGCCTGCGGCTTCGGGTGCTAGTGA
TTTGGAATCACCTGCCCTAACTCCGGTGGTTTTGGTGGAGCGCTGCTATT
ACAAGGCCTGCAGGCCCTTTACAGTGGATGCAGAAACTCCGCTGTTTCGC
TTGCGTCTAAAGTGCTCTAGATTTATCTCCTTGATGGGCTTGGTCCTGAA
CAGCAGGCTGACTCCCAACCTATTGGGTCACGTCCAGCAGCTGGAGTACC
GCGAATCGCTGCGGCTGGACCTTTGCGAGGTGCCCGCTGAAAGCGAGGGT
CCGGCCACGTCGCCCGTATGGAGTCACGTTGTCCAGAGCCAGAATACCAA
GTACAACTGCAACCTGCATCTTGGCTGGCGACGCGAAGAGGCCTGTGTGC
TGAATCCGGAGCTGACCTATGAGCTGCAGATCCGCTGGGACAGCAGTGCT
TACGGCGCCGAGTATCCGTGCAGCCTGCAGTCCTGCCAGGCGGACGGAAT
TCGGTTCACTGACGAGGACAGCTTCAGCGGAAGTCTCGTCAAGGGACTGC
GCTATGCCAACCTGGTGTAGAAGCTTTCTAGACCAT

BS29587.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11275-RA 1254 CG11275-PA 1..1254 17..1270 6270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11275-RA 1664 CG11275-RA 298..1551 17..1270 6270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22181276..22182529 17..1270 6270 100 Plus
Blast to na_te.dros performed on 2014-11-28 11:30:42 has no hits.

BS29587.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:33 Download gff for BS29587.complete
Subject Subject Range Query Range Percent Splice Strand
CG11275-RA 299..1552 17..1270 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:29 Download gff for BS29587.complete
Subject Subject Range Query Range Percent Splice Strand
CG11275-RA 298..1551 17..1270 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:26 Download gff for BS29587.complete
Subject Subject Range Query Range Percent Splice Strand
CG11275-RA 298..1551 17..1270 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:26 Download gff for BS29587.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22181276..22182529 17..1270 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:29 Download gff for BS29587.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18068781..18070034 17..1270 100   Plus

BS29587.pep Sequence

Translation from 16 to 1269

> BS29587.pep
MSISAVDRKEPGSVSSGLGRRYGQLLRGAKYTDCVFHVCEEQVKCHKLIL
SSASPVFEAMFFGPMQNNEPEPEIEIHDISSAIFKVLVEYIYTGVVDYNG
LELVACIELYYAAEKYLLEELIADTLMVITRKLRFANILPALELSVCMGL
DGLLEVCMTFFMRCCVNNGQYMSHLKEHYVHVSKECVKAIIAACKEPHKL
LIWYVYEWTRQECEQLGLGPSDADLVVHDLGGKTSDWPAASGASDLESPA
LTPVVLVERCYYKACRPFTVDAETPLFRLRLKCSRFISLMGLVLNSRLTP
NLLGHVQQLEYRESLRLDLCEVPAESEGPATSPVWSHVVQSQNTKYNCNL
HLGWRREEACVLNPELTYELQIRWDSSAYGAEYPCSLQSCQADGIRFTDE
DSFSGSLVKGLRYANLV*

BS29587.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11275-PA 417 CG11275-PA 1..417 1..417 2211 100 Plus
BTBD9-PB 722 CG1826-PB 28..219 18..210 156 26.1 Plus
BTBD9-PA 722 CG1826-PA 28..219 18..210 156 26.1 Plus