BS29591.complete Sequence
1316 bp assembled on 2012-05-25
GenBank Submission: KX805427
> BS29591.complete
GAAGTTATCAGTCGACATGTTCGACGAGCCCATATCCAGCTTCGTTTTTA
CCGACGAAGAGACCACGCAGACATTCCACCACCAGTGGTTTTCCCAGGGC
CAGTTACACGAATGTGCCACCTGCTACAGCTCCATCGACGCAGATGAGCC
GCCCTCCCAGCATTGGCTGCGGGGAGGAGAAGCATCACAGGGCTTGCATC
TTACCAAGCAACAGCAGGCCGTTATGGATATTATCGAGGCCCGCCAGATC
GAGACTTTCTTTTTCTGCGACGAGAGTTCCAAGGACAAGCTGGAACACTT
CATGGGCGAGACCTGTGCGAGGGGAATCCCCGAGCTTCTCCGCTGGATGT
TCCAGAACAACACCGTGGCCGTGGAGTTCAATTTGGCCTGCTACGTGAAC
GCCATGGACCAGGTGTTGATCTTTCAGAGCGGCTCGCTGAGGGTGGACCA
CCACTACGACGTAGACGAATCCGTGGGCGTGGTCTACGAGATGCTTATGC
AGAGGATCGAAAACTACCTCAACTGCAGCAGCGAGTACGGCATGGCAGAG
TGCAGCATCACCAGATTGAAAGTACAGGTGAAGAGGATTAGGGTGGAGGC
GGACGGTCAGTCAGCGGACTCGTCCGTCTTCGCCCTACCCCTGCAGCTTC
AGGAGGAGGAGGGCCTGACCGCCACTACCGGCTGCTCCACCAGCGAGGCA
GAGCTTGCCAGTCTGCGCTCCGCCTACCTGAAGCACTTCCGCGAGTGCAA
CGGCAACTTCCCGCCCAACATGCGCGTCAATCTCTACGGACTGCAGCAGT
GCAAGACCACCAAGGAGCTGTATGTGGTGCCCTATCATATCAGCGAAACC
CTCCAGCAGCTGCCCAACAAGAACTTCCTCATCCTGAACAATATCATGGG
CCAATTCCAGCGGCTCCACGAGCTCTCCACCCCCGTCAATTCCATCGAAA
GGGATCAGACCAGCTCGCCGCTAAAGGACCTCCACTGCCGGAGGTGTCGC
ACCCAGTTCTCGCGACGCAGCAAACTGCACATCCACCAGAAGCTGCGCTG
TGGCCAGGACTTCTCCGTGGACAGCATGCACGCGGACATCGTGGAGATCT
ACGAGCAGTGCCTGCCCATCTCGAGAAGCGTCTTCCAGCACGCCTGCTAC
GGCATCACCAAGCCCAAGACCATGATGCGGAAGGGTCAGTTTGTGCCCAT
CGAGTGCGACTGGCGCAGCGAGAGCTCCGTGAAGGTGCAGCACGGCCCGT
GTGTCGTCATCAGCAACGCCCAGCACAATAGTCCTTTTAAATTTTATTAA
AAGCTTTCTAGACCAT
BS29591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7271-RA | 1284 | CG7271-PA | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| term-RA | 1287 | CG4216-PA | 1..1287 | 17..1300 | 6235 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7271-RA | 1407 | CG7271-RA | 100..1385 | 16..1301 | 6430 | 100 | Plus |
| term-RA | 1469 | CG4216-RA | 160..1448 | 16..1301 | 6245 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:30:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18588858..18590143 | 16..1301 | 6430 | 100 | Plus |
| 3L | 28110227 | 3L | 18592324..18593612 | 1301..16 | 6245 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:30:49 has no hits.
BS29591.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:34 Download gff for
BS29591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7271-RA | 102..1378 | 22..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:33 Download gff for
BS29591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7271-RA | 106..1382 | 22..1298 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:29 Download gff for
BS29591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7271-RA | 106..1382 | 22..1298 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:29 Download gff for
BS29591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18588864..18590140 | 22..1298 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:33 Download gff for
BS29591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18581964..18583240 | 22..1298 | 100 | | Plus |
BS29591.pep Sequence
Translation from 16 to 1299
> BS29591.pep
MFDEPISSFVFTDEETTQTFHHQWFSQGQLHECATCYSSIDADEPPSQHW
LRGGEASQGLHLTKQQQAVMDIIEARQIETFFFCDESSKDKLEHFMGETC
ARGIPELLRWMFQNNTVAVEFNLACYVNAMDQVLIFQSGSLRVDHHYDVD
ESVGVVYEMLMQRIENYLNCSSEYGMAECSITRLKVQVKRIRVEADGQSA
DSSVFALPLQLQEEEGLTATTGCSTSEAELASLRSAYLKHFRECNGNFPP
NMRVNLYGLQQCKTTKELYVVPYHISETLQQLPNKNFLILNNIMGQFQRL
HELSTPVNSIERDQTSSPLKDLHCRRCRTQFSRRSKLHIHQKLRCGQDFS
VDSMHADIVEIYEQCLPISRSVFQHACYGITKPKTMMRKGQFVPIECDWR
SESSVKVQHGPCVVISNAQHNSPFKFY*
BS29591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7271-PA | 427 | CG7271-PA | 1..427 | 1..427 | 2277 | 100 | Plus |
| term-PA | 428 | CG4216-PA | 1..428 | 1..427 | 2240 | 98.8 | Plus |
| CG6885-PA | 378 | CG6885-PA | 7..377 | 7..384 | 470 | 27.9 | Plus |
