BS29592.complete Sequence
1814 bp assembled on 2012-06-18
GenBank Submission: KX800183
> BS29592.complete
GAAGTTATCAGTCGACATGGTGGTTTGCGGGAACATTTTGGCCAGGAACA
ACTTCGAGCACTTTGTTCTGGCGTGTGCTCACCAAAATGACTGCTACGTG
GAGATGGAGTTCAAGCGGTGGCGAGAGTTCATCGTGCACGTCAAGGAGCA
CCTGGAAGCAAATCCAAGCATGCAGCAAGAGCTCACTACTTCCGAAGTCA
TTTCGTCAGCCAAATGCGAGGAGGAGGTCTCGCCAGCCAAGGTGTTCATA
GTGGAGGAGCCTCCGGAAAATTGCCTGGCTGAAGACATGTTCGTTGACGT
GCCACCTTCATCAGAGAACGACGAGAGCACCAGCCCGGTGGAGGAGGAGG
AGGAAGAAGACGACGAGGTGGACTCCTCCTCGATGACAGTTGACTGCGAA
TTGGGCACCAGAAACTCCACACACTTTGCTCCTTTAACCAAATTCAATCC
TACGTTTTACCGACGCAGTCCTCGGATCACACAGTTCATTGAACTGTATA
AGCAGCAGACATGCCTCTGGGATCCAGCGGATGAGTCGTACAGGGACAAG
GAGAAACGCGCAAATGCCTATGAGGAGTTGCTGGAGCAATTAAAGGCGAC
CGTCAATCTTCACCTAACGGCCTATAAGCTGAAGAAGTGCATCACCAGCC
TACACGCGCAGTATGCGTCGATCTCGCGGCAGAAGAAAACTCAGAAACTA
ACCAAGGTTCCACTGTACTACCATGGAAAGTACAGCTTTCTGGCAGAGCG
CGGTAGTCTGGAGGATGCGGACAGCGATGATGTCGACGGCGATGGCAAAA
TAAAGCTGGTGTTCACAGAGGAGAATCAACTGACCACACAGTTCATTGAT
TTGTACTCCAAGTTTCCCCAACTGTACGATCCCGCGCACAAGCACTTCTG
CAATCTAAACGTACGAAAGTCATCGCTCATAGAGATCACTGACCTGCTGA
CTTCGGAGTTTTCGTTGGGCCTGGTCACCCACTACGATGTCTACGACAGT
ATTCAGAGCATGCGCCAATGGTATTCGCGACGGATCAAAACCCTCACAGA
CGTCCAATGTGTGGGTCTCTCGCTGGCCGAGAAGCAGTACATCGAGCGCT
GCAATAGCTTTATGCCCACTAAATCATTCCGACAGAAGCTTAAATGTGAA
GTCTGCGAGCACTCCTTTAGCACAGATCACGCCCTGCAAGCACATCAGTT
CCGGGATCATAAGATGGGCGATGGAGGCTGGTTTCGCTGCACGCTTTGCG
AGCTGAACTTCGACCGAAAGTGTCACCTGCAGCAGCACAGCCAGCGTGTG
CACATGGACAAGAGCTTTGTCTGCGAGATCTGCAGCAGGAGCTTTGCCTT
TGGAAATCAACTGGCTATCCACAAACGCACCCATGACGAGAAGCACGTCG
CCAAGCCATTTGTCTGCGAGTTCTGCGGCAAGTGTTTTAAGCAAAAAATC
CAAATGACAACGCACGTAACTGCGGTTCACACCAAGATCCGAGCCTTCAA
GTGCGACATGTGCCCCAAGGACTTCCTGACCAAGCGCGACCTCAAGGACC
ACGTAAAGGCGCACCTGAACATCCGCGACAAGGTCTGCGAGGTCTGTCAG
AAGGCCTTCACCAATGCCAACGCCTTAGTCAAGCATCGCCACATCCACAA
GGAGAAGACCCTGCAATGTTCGCTCTGCACGACGCGCTTCTCGGAGCGAG
TTAGTCTTGGCGTCCACATGCGACGCACCCACAAGATCCTCAAGAGCTCT
CTGTCGTCAAGCGACGCACTCTTTACAAAGACATTCCCTCAGCCTTGAAA
GCTTTCTAGACCAT
BS29592.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 1782 | CG1605-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
| CG1602-RA | 1734 | CG1602-PA | 1392..1530 | 1450..1588 | 185 | 75.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 54..1852 | 16..1814 | 8920 | 99.7 | Plus |
| CG1602-RA | 1901 | CG1602-RA | 1468..1606 | 1450..1588 | 185 | 75.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:36:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7510776..7511786 | 1814..804 | 4980 | 99.5 | Minus |
| 2R | 25286936 | 2R | 7512270..7512696 | 442..16 | 2135 | 100 | Minus |
| 2R | 25286936 | 2R | 7511841..7512203 | 805..443 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 7517218..7517356 | 1588..1450 | 185 | 75.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:36:06 has no hits.
BS29592.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-06-18 13:51:08 Download gff for
BS29592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 30..1810 | 17..1797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:58 Download gff for
BS29592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 55..1835 | 17..1797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:47:31 Download gff for
BS29592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 55..1835 | 17..1797 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:47:31 Download gff for
BS29592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7510793..7511784 | 806..1797 | 100 | <- | Minus |
| 2R | 7511841..7512203 | 443..805 | 100 | <- | Minus |
| 2R | 7512270..7512695 | 17..442 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:58 Download gff for
BS29592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3398298..3399289 | 806..1797 | 100 | <- | Minus |
| arm_2R | 3399346..3399708 | 443..805 | 100 | <- | Minus |
| arm_2R | 3399775..3400200 | 17..442 | 100 | | Minus |
BS29592.pep Sequence
Translation from 16 to 1797
> BS29592.pep
MVVCGNILARNNFEHFVLACAHQNDCYVEMEFKRWREFIVHVKEHLEANP
SMQQELTTSEVISSAKCEEEVSPAKVFIVEEPPENCLAEDMFVDVPPSSE
NDESTSPVEEEEEEDDEVDSSSMTVDCELGTRNSTHFAPLTKFNPTFYRR
SPRITQFIELYKQQTCLWDPADESYRDKEKRANAYEELLEQLKATVNLHL
TAYKLKKCITSLHAQYASISRQKKTQKLTKVPLYYHGKYSFLAERGSLED
ADSDDVDGDGKIKLVFTEENQLTTQFIDLYSKFPQLYDPAHKHFCNLNVR
KSSLIEITDLLTSEFSLGLVTHYDVYDSIQSMRQWYSRRIKTLTDVQCVG
LSLAEKQYIERCNSFMPTKSFRQKLKCEVCEHSFSTDHALQAHQFRDHKM
GDGGWFRCTLCELNFDRKCHLQQHSQRVHMDKSFVCEICSRSFAFGNQLA
IHKRTHDEKHVAKPFVCEFCGKCFKQKIQMTTHVTAVHTKIRAFKCDMCP
KDFLTKRDLKDHVKAHLNIRDKVCEVCQKAFTNANALVKHRHIHKEKTLQ
CSLCTTRFSERVSLGVHMRRTHKILKSSLSSSDALFTKTFPQP*
BS29592.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-PA | 593 | CG1605-PA | 1..593 | 1..593 | 3175 | 100 | Plus |
| CG1602-PA | 577 | CG1602-PA | 1..565 | 1..578 | 1038 | 38.6 | Plus |
| CG1603-PB | 586 | CG1603-PB | 1..586 | 1..547 | 732 | 30.1 | Plus |
| CG1603-PA | 586 | CG1603-PA | 1..586 | 1..547 | 732 | 30.1 | Plus |
| rgr-PA | 856 | CG8643-PA | 434..847 | 158..572 | 360 | 25.3 | Plus |
