BS29596.complete Sequence
869 bp assembled on 2012-05-25
GenBank Submission: KX806089
> BS29596.complete
GAAGTTATCAGTCGACATGGCATGCGCCAAGAAATTGCTTTTTCGCGTTT
TCCTGAATAACTCTTTGACGGCGAACCGCACAATCACCATGTCCGCCGCG
CGACGTGCCGAGGAGGCCATTGAGAAGCTGAAGGAGGACAATCCCTACTA
CTCCAAGTACGCGAGCAAGATTGCCAAGTTGCAGCAGACGTCGGCTGAGG
AGTTCCTGGATCGCGTGGAGCGTGTGGTGAATCCCATCAAAGATGGGCAG
AGCCAGGCCAGGTCCTACTCCGAGCTTCTGAATCCCAAGCAAAAACTGCA
GGCTGAGCAGGCAGCTGAACTGCCCCACAAGAAGCTCACTGATATCATGA
AACTGGAACTGATTGAGGACAAGACCGCCGAAGAGGTCTCCCAGATTTGG
CTGGAGTACCATAAGACCAAGGAGGTCCTGGCCGCCACTCTAAGCACATC
TCAGTACGAGAACCTCATGGCGCGCGCCAAGGAGCACCCCGTCTTTCTGC
TGCCACTGCCCCGCAGTGAGGGATTCGAGTTTGTCATGCTCCAGTTCGCA
GCCAACACCGTGCACTTCACTCCGCTTTTGGCGTACCAGGTGCACCATGA
GAACGCTCCGGAGTGTCTCACAGTGGTTCACTATACCGAGGTCCAAGACA
AGGGTGTAGTTCTCATGCGCGGTGAATACGACACTAAGGTACTCACAGCC
CAGGAGGCTCAGTGTCTGGCCAATGAGTTGCAGATGTTCTACCTGAAGCC
CGACGAGGGCAAGCTGCGCTTGCTGAACACTTTTACCCGTAAGCCGGACG
AGTTCAAGCACATGGATCTAATTAAGGAAGTTGAGAACATACAGCTGGTC
TAGAAGCTTTCTAGACCAT
BS29596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10340-RA | 837 | CG10340-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10340-RA | 938 | CG10340-RA | 44..880 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16613456..16614051 | 853..258 | 2980 | 100 | Minus |
3R | 32079331 | 3R | 16614102..16614348 | 263..17 | 1235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 11:28:30 has no hits.
BS29596.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:06 Download gff for
BS29596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10340-RA | 40..876 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:13 Download gff for
BS29596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10340-RA | 44..880 | 17..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:17 Download gff for
BS29596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10340-RA | 44..880 | 17..853 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:17 Download gff for
BS29596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16613456..16614047 | 262..853 | 100 | <- | Minus |
3R | 16614104..16614348 | 17..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:13 Download gff for
BS29596.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12439178..12439769 | 262..853 | 100 | <- | Minus |
arm_3R | 12439826..12440070 | 17..261 | 100 | | Minus |
BS29596.pep Sequence
Translation from 16 to 852
> BS29596.pep
MACAKKLLFRVFLNNSLTANRTITMSAARRAEEAIEKLKEDNPYYSKYAS
KIAKLQQTSAEEFLDRVERVVNPIKDGQSQARSYSELLNPKQKLQAEQAA
ELPHKKLTDIMKLELIEDKTAEEVSQIWLEYHKTKEVLAATLSTSQYENL
MARAKEHPVFLLPLPRSEGFEFVMLQFAANTVHFTPLLAYQVHHENAPEC
LTVVHYTEVQDKGVVLMRGEYDTKVLTAQEAQCLANELQMFYLKPDEGKL
RLLNTFTRKPDEFKHMDLIKEVENIQLV*
BS29596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10340-PA | 278 | CG10340-PA | 1..278 | 1..278 | 1412 | 100 | Plus |