Clone BS29596 Report

Search the DGRC for BS29596

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:295
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG10340-RA
Protein status:BS29596.pep: full length peptide match
Sequenced Size:869

Clone Sequence Records

BS29596.complete Sequence

869 bp assembled on 2012-05-25

GenBank Submission: KX806089

> BS29596.complete
GAAGTTATCAGTCGACATGGCATGCGCCAAGAAATTGCTTTTTCGCGTTT
TCCTGAATAACTCTTTGACGGCGAACCGCACAATCACCATGTCCGCCGCG
CGACGTGCCGAGGAGGCCATTGAGAAGCTGAAGGAGGACAATCCCTACTA
CTCCAAGTACGCGAGCAAGATTGCCAAGTTGCAGCAGACGTCGGCTGAGG
AGTTCCTGGATCGCGTGGAGCGTGTGGTGAATCCCATCAAAGATGGGCAG
AGCCAGGCCAGGTCCTACTCCGAGCTTCTGAATCCCAAGCAAAAACTGCA
GGCTGAGCAGGCAGCTGAACTGCCCCACAAGAAGCTCACTGATATCATGA
AACTGGAACTGATTGAGGACAAGACCGCCGAAGAGGTCTCCCAGATTTGG
CTGGAGTACCATAAGACCAAGGAGGTCCTGGCCGCCACTCTAAGCACATC
TCAGTACGAGAACCTCATGGCGCGCGCCAAGGAGCACCCCGTCTTTCTGC
TGCCACTGCCCCGCAGTGAGGGATTCGAGTTTGTCATGCTCCAGTTCGCA
GCCAACACCGTGCACTTCACTCCGCTTTTGGCGTACCAGGTGCACCATGA
GAACGCTCCGGAGTGTCTCACAGTGGTTCACTATACCGAGGTCCAAGACA
AGGGTGTAGTTCTCATGCGCGGTGAATACGACACTAAGGTACTCACAGCC
CAGGAGGCTCAGTGTCTGGCCAATGAGTTGCAGATGTTCTACCTGAAGCC
CGACGAGGGCAAGCTGCGCTTGCTGAACACTTTTACCCGTAAGCCGGACG
AGTTCAAGCACATGGATCTAATTAAGGAAGTTGAGAACATACAGCTGGTC
TAGAAGCTTTCTAGACCAT

BS29596.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10340-RA 837 CG10340-PA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10340-RA 938 CG10340-RA 44..880 17..853 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16613456..16614051 853..258 2980 100 Minus
3R 32079331 3R 16614102..16614348 263..17 1235 100 Minus
Blast to na_te.dros performed on 2014-11-28 11:28:30 has no hits.

BS29596.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:06 Download gff for BS29596.complete
Subject Subject Range Query Range Percent Splice Strand
CG10340-RA 40..876 17..853 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:13 Download gff for BS29596.complete
Subject Subject Range Query Range Percent Splice Strand
CG10340-RA 44..880 17..853 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:44:17 Download gff for BS29596.complete
Subject Subject Range Query Range Percent Splice Strand
CG10340-RA 44..880 17..853 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:44:17 Download gff for BS29596.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16613456..16614047 262..853 100 <- Minus
3R 16614104..16614348 17..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:13 Download gff for BS29596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12439178..12439769 262..853 100 <- Minus
arm_3R 12439826..12440070 17..261 100   Minus

BS29596.pep Sequence

Translation from 16 to 852

> BS29596.pep
MACAKKLLFRVFLNNSLTANRTITMSAARRAEEAIEKLKEDNPYYSKYAS
KIAKLQQTSAEEFLDRVERVVNPIKDGQSQARSYSELLNPKQKLQAEQAA
ELPHKKLTDIMKLELIEDKTAEEVSQIWLEYHKTKEVLAATLSTSQYENL
MARAKEHPVFLLPLPRSEGFEFVMLQFAANTVHFTPLLAYQVHHENAPEC
LTVVHYTEVQDKGVVLMRGEYDTKVLTAQEAQCLANELQMFYLKPDEGKL
RLLNTFTRKPDEFKHMDLIKEVENIQLV*

BS29596.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10340-PA 278 CG10340-PA 1..278 1..278 1412 100 Plus