BS29607.complete Sequence
2006 bp assembled on 2012-10-15
GenBank Submission: KX806308
> BS29607.complete
GAAGTTATCAGTCGACATGAGGTTTATTTTACTATCCCTGCTGTTGGCAT
CCTTCTGCCTCTGGGAGGCGGTTCACACTTGTGCCAGCATCGAGCAGCGC
TACAAGTTTCCCAATAGCAATGTCTACGTGCGACTTAGGAGAGGTGATAA
GTTGCAGTATGAGCTAATGAAGGGCGAGAAGTCCCTGCAGACGGTGACCT
TCGACAACTTTGACAGCAGCGCCAATCTGGTGGAGACGAGCAGTGGTAGC
TACCAGCTTACCGATGGCCAATCCACCGTGGAGTTCACCCTGGTCAAAAG
CGGAGTGGTTGCCGGCACAGGCAGTGAGATAACCCATGTGAAAGTATCCC
GAGATCAGGTGCTGCAAGGCACCCAACCCAGGGATTGCGTCCCCCTGAAG
ACCGGATCGACGCACTGGTTCAGTGGTCCGGAGCAGAAGCAACACTACTG
GCCAGTGGAGCGACAGAGGCATAGTAACTATTCCTACCTGCCAAAGGAGC
TGGATAACTTTGGTGTGGGTGAGCGATATTGGTTGAACGGCGACGGAGTC
TTTTTGTACGTGGAGAGCAACACTCCTCTGTTTATTGATCAGAATAGTGC
TGCCTATCCTGACCAGCTGTGTCTGAGTGCTATTAGTGCTCTACCCTATG
ATCCTCGGGTGACCTCTGCCAAATTCGTTTACCACGTAGCTGTGGCCAAG
GATGCCAAGGCGGCGCACCGGTATGCCGTTAAAACGTTCCTCGGCCAACC
CACAGGCTATCCCGATGAGCGAATGGTCATGCATCCTGTGTGGTCCACAT
GGGCTCTCTACAAGGCTGAGGTATCCGACGATGTGGTTCGTGACTTCGCC
AAGCAGATTCTGGATAATGGGTTCAACAACAGCCAGCTGGAAATCGACGA
TGATTGGGAGGATTGCTATGGAGCCATGACCTTCAGGAAGAACAAGTTCC
CCGATAGCAAGACCCTGACTGATGACCTCAAGGCCTTGGGTTTCCGTGTG
ACCCTGTGGATTCATCCATTCATTAACAACAACTGCACAGCCATTTACGA
TGAAGCTAAGTCTAAGGGTTACCTGGTGCTCGATCACGAGGGAAGCTCCG
ACACGCAATGGTGGAACAGCAAGCCCAAGGATGCAGCCATTTTGGACTTT
ACCAAAACTGAGGTTCAGGAGTGGTTCAGCAAGCGTTTAAAGCGCCTTCA
GGATGAGGATGGCATTGATAGCTTCAAGTTTGATGCCGGAGAGACCAGTT
GGCTACCCAGTGATCCTGTACTCCAGGCTAGCAGTTCCATGGTGACACCA
CTGCAGGCGGTGGGCGACTACGTGCGTACTGTAGCGGCATTCGGAGACAT
GGTGGAGGTTCGATCAGCCCAGAACACTCAAGATCAGCCAATCTTCGTGC
GCATCGTGGACAAGGACTCCGAATGGGGATGGAACAACGGCCTGCTCACA
CTGATCTCTTCGATGCTGCAAATGAACCTCAACGGTTATCCTTTCGTCCT
TCCCGATATGATTGGTGGTAATGGCTACTACGAAAAGCCACCAACCAAGG
AGCTTTTCCTCCGTTGGCTGCAGGCCAACGTCTTTATGCCCGCCCTGCAG
TTCTCCTTCGTTCCCTGGAACTTTGACGACGAGGCCATTGCGATCAGCAA
GAACTTCACCGCCCTCCATGCCACCTATACACCTTACATTATGAAGCTCT
TTAAGCGCGCTGTGGATTCTGGTGAACCTGTGAATGTTCCCCTCTGGTGG
ATCGCCCCGACTGATGAGGTGGCGCAGTCTATCTATGATGAGTTCCTTTT
GGGCGAAGACATCATCGCTGCTCCCGTTGTGGTCGAGGGCGCCACCAAGC
GAGACATTTACCTGCCAGAGGGCGAGTGGCAGGATGGAAACAGCGACCAG
GTGTACACTGGACCCACCTGGGTGATGGACTACGCCGCTCCCTTGGATAC
CCTACCCTACTTTTTGCGCGTGGGATTCACACTGGAGTAGAAGCTTTCTA
GACCAT
BS29607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:36:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tobi-RA | 1974 | CG11909-PA | 1..1974 | 17..1990 | 9870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:36:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tobi-RA | 2104 | CG11909-RA | 36..2010 | 17..1991 | 9875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25345113..25346886 | 1790..17 | 8870 | 100 | Minus |
| 3R | 32079331 | 3R | 25344855..25345056 | 1991..1790 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:36:39 has no hits.
BS29607.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:04 Download gff for
BS29607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tobi-RA | 27..2000 | 17..1990 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:43 Download gff for
BS29607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tobi-RA | 36..2009 | 17..1990 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:50 Download gff for
BS29607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tobi-RA | 36..2009 | 17..1990 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:50 Download gff for
BS29607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25344856..25345055 | 1791..1990 | 100 | <- | Minus |
| 3R | 25345113..25346886 | 17..1790 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:43 Download gff for
BS29607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21170578..21170777 | 1791..1990 | 100 | <- | Minus |
| arm_3R | 21170835..21172608 | 17..1790 | 100 | | Minus |
BS29607.pep Sequence
Translation from 16 to 1989
> BS29607.pep
MRFILLSLLLASFCLWEAVHTCASIEQRYKFPNSNVYVRLRRGDKLQYEL
MKGEKSLQTVTFDNFDSSANLVETSSGSYQLTDGQSTVEFTLVKSGVVAG
TGSEITHVKVSRDQVLQGTQPRDCVPLKTGSTHWFSGPEQKQHYWPVERQ
RHSNYSYLPKELDNFGVGERYWLNGDGVFLYVESNTPLFIDQNSAAYPDQ
LCLSAISALPYDPRVTSAKFVYHVAVAKDAKAAHRYAVKTFLGQPTGYPD
ERMVMHPVWSTWALYKAEVSDDVVRDFAKQILDNGFNNSQLEIDDDWEDC
YGAMTFRKNKFPDSKTLTDDLKALGFRVTLWIHPFINNNCTAIYDEAKSK
GYLVLDHEGSSDTQWWNSKPKDAAILDFTKTEVQEWFSKRLKRLQDEDGI
DSFKFDAGETSWLPSDPVLQASSSMVTPLQAVGDYVRTVAAFGDMVEVRS
AQNTQDQPIFVRIVDKDSEWGWNNGLLTLISSMLQMNLNGYPFVLPDMIG
GNGYYEKPPTKELFLRWLQANVFMPALQFSFVPWNFDDEAIAISKNFTAL
HATYTPYIMKLFKRAVDSGEPVNVPLWWIAPTDEVAQSIYDEFLLGEDII
AAPVVVEGATKRDIYLPEGEWQDGNSDQVYTGPTWVMDYAAPLDTLPYFL
RVGFTLE*
BS29607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tobi-PA | 657 | CG11909-PA | 1..657 | 1..657 | 3515 | 100 | Plus |
| CG33080-PD | 725 | CG33080-PD | 167..719 | 118..652 | 530 | 27 | Plus |
| CG33080-PB | 725 | CG33080-PB | 167..719 | 118..652 | 530 | 27 | Plus |
| CG33080-PC | 844 | CG33080-PC | 286..838 | 118..652 | 530 | 27 | Plus |
| CG33080-PA | 925 | CG33080-PA | 367..919 | 118..652 | 530 | 27 | Plus |
