Clone BS29616 Report

Search the DGRC for BS29616

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:296
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptUev1A-RB
Protein status:BS29616.pep: full length peptide match
Sequenced Size:344

Clone Sequence Records

BS29616.complete Sequence

344 bp assembled on 2012-05-25

GenBank Submission: KX801319

> BS29616.complete
GAAGTTATCAGTCGACATGACGCTCACCTACTGGATCGGCATGATCATCG
GTCCGCCTAGAACACCATTCGAGAATCGAATGTATTCACTAAAGATCGAG
TGCGGCGAACGCTATCCGGATGAGCCACCAACGCTCCGGTTTATAACTAA
AGTAAACATTAACTGCATTAATCAGAACAATGGCGTGGTTGATCATAGAT
CAGTTCAGATGTTGGCCAGATGGAGTCGCGAGTACAATATAAAAACGATG
CTGCAGGAAATCCGTAGGATTATGACCATGAAAGAGAACCTGAAGCTGGC
ACAGCCGCCAGAAGGTAGCTGTTTTTAGAAGCTTTCTAGACCAT

BS29616.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 438 CG10640-PC 123..438 13..328 1580 100 Plus
Uev1A-RA 438 CG10640-PA 123..438 13..328 1580 100 Plus
Uev1A-RB 312 CG10640-PB 1..312 17..328 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-RC 1189 CG10640-RC 149..464 13..328 1580 100 Plus
Uev1A-RB 1609 CG10640-RB 303..618 13..328 1580 100 Plus
Uev1A-RA 1196 CG10640-RA 192..507 13..328 1580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5363875..5364016 328..187 710 100 Minus
3L 28110227 3L 5364082..5364209 189..62 640 100 Minus
3L 28110227 3L 5364943..5364991 61..13 245 100 Minus
Blast to na_te.dros performed on 2014-11-28 11:31:01 has no hits.

BS29616.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-05-25 09:30:36 Download gff for BS29616.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 196..507 17..328 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:38 Download gff for BS29616.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 196..507 17..328 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:45:35 Download gff for BS29616.complete
Subject Subject Range Query Range Percent Splice Strand
Uev1A-RA 196..507 17..328 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:45:35 Download gff for BS29616.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5363875..5364015 188..328 100 <- Minus
3L 5364084..5364209 62..187 100 <- Minus
3L 5364943..5364987 17..61 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:38 Download gff for BS29616.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5356975..5357115 188..328 100 <- Minus
arm_3L 5357184..5357309 62..187 100 <- Minus
arm_3L 5358043..5358087 17..61 100   Minus

BS29616.pep Sequence

Translation from 16 to 327

> BS29616.pep
MTLTYWIGMIIGPPRTPFENRMYSLKIECGERYPDEPPTLRFITKVNINC
INQNNGVVDHRSVQMLARWSREYNIKTMLQEIRRIMTMKENLKLAQPPEG
SCF*

BS29616.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Uev1A-PB 103 CG10640-PB 1..103 1..103 557 100 Plus
Uev1A-PC 145 CG10640-PC 43..145 1..103 557 100 Plus
Uev1A-PA 145 CG10640-PA 43..145 1..103 557 100 Plus
Ubc6-PC 151 CG2013-PC 36..114 6..87 136 34.9 Plus
Ubc6-PA 151 CG2013-PA 36..114 6..87 136 34.9 Plus