BS29680.complete Sequence
4316 bp assembled on 2013-04-18
GenBank Submission: KX805715
> BS29680.complete
GAAGTTATCAGTCGACATGAAGCTGAGCACGGACGCGCACTCCGAGATCG
AGGGCGACGCTGCCCACGGCAATGTGCTGTGCAACTCCGCGTCCGATTCC
CTGACCGCCACCGACGAAGTGGCTGCGGGCAACGACGAGTCGGTGGCCAC
CGAAGGCGATGATGTCGAAATTCCGAGGGACACCAACAACAGCACTCCGG
TTCGACTGCTGGACAAGCCCGGCCAAAACCCGGTGCAGAACGGCGCACAG
CCCGCGGCGGAGGAGTCGGAGCTGGAGAGTCAGCGGCAGACGCCAGTCCA
AAAACAGCAACAACAGCGTGTGTCCATGGTGAACAGGAAACGAGATCTTA
TCAACTTGCAGTCGGCGCTGAGCCCCAAATATATTGGCTATGCCAATGCC
AACTCACCCACGCCGCTTTCCGATTCCGATGACACAATACGCACGACGAG
GCGACGCGTTAACCAAGCGGCGGCTTTAAATAACAGCAGTGCTGGCGAGA
CCCTGGCCCATGATAATGCGTCACCAAGGACCCCCGGGGGAGGAGGAGGA
GGTGGTGGAGATGATAGCGCTAATCAGCTGCTCAGCAAGACCTACATGAG
CCCCATCGAGAAGCTGCTAATCAAAAACGGCGCTAGTTCGCCCAACAGCA
CCGGTTTCGAGGCGGGCTCCGAGGACCTGGGCATACGGCCAATCGTTCGC
AAGCACGTAAAGCGCAAAATGAAAAGAGTGCCGAAGGCGAAAGTAACCCT
CGAACTGGACGAAAAAAACCAGCAAGAGGTTGACGAAAAGTCAGTAAAAA
CGGAGCCAATAGATGAGGAAGTTGACCGGACAGATGAAGCCCCAACTCAA
GAGGCTCAAACTACCGCGATCTCCATTAAATCAGAGACTGAGGCTGAGCA
CAAAGCAGCCGTAGATGTTCATATAAAGCAAGAGGATACTATCAGGTTAG
ATATAGTTAATAATCCAGTAGAGAGCACTTCCATAGTTATCACTGAAGAG
CCGAAAGACCTGGAAAAAAGTACTGAAGAACTGGCATTTGCCCTGCCATT
GGCCTCCTCCACGGAGGTGGATCTGAAATCTCCACCCGACTTGAGCTCCA
CGGCGCTCGCCACATCCATCAAATCCCCCTCCTCTGTGAGCATCGATAGC
GCCAAAGGCCTGTCCATAGTCACTGATCCCGGTTGGCCCACCTACCAAGT
TGGTGATTTGTTTTGGGGCAAGGTCTTCTCGTACTGCTTCTGGCCCTGCA
TGGTGTGTCCGGATCCGCTTGGCCAGATTGTGGGCAACATGCCGAGCCAT
CCTCAGCGCTCATCCCTTGACAACGCCAACGTTCCCATTCAAGTGCATGT
GCGCTTTTTCGCCGACAATGGACGACGCAACTGGATTAAACCGGAGAATC
TGCTGACCTTTGCCGGACTGAAGGCTTTCGATGACATGCGCGAGGAATTG
CGAATTAAGCATGGACCAAAGAGCGCCAAGTACCGTCAGATGGTGCCCAA
GCGGACAAAGGTTGTCATCTGGCGACAAGCCATCGAAGAGGCGCAAGCTA
TGACCCAGATCCCGTACTCCGATCGTCTCGAAAAATTCTACCAGACGTAC
GAAAACGTTGTCACTCTTAATAGGCAAAAACGCAAGCGGACCAAGTATAT
GATGCAGGACACTTCTGACGTGGGCAGCAGCCTGTACGACTCCACGGACA
ACCTGCACAACAAGCAAGGCACGCAGTTGCTGGCCGTGAAACGAGAACGC
TCGGAGTCGCCCTTTAGTCCGGCTTTCTCGCCCGTAAAGAGCAAAAACGA
AAAGCGGGCCAAGCGCCGCAAACTGAGCAATGGCACCGAAGCGGATACTG
GCAGCAACAGCATGGCAGTAACTCCATCACAGACCGAAACAACTGTGGAC
AGCTCCGCTTATGAAAATCCCGAGTTCAGACAGCTCTTGTCTGCCGTCAT
GGAATATGTAATGATGAACCGGTCAGATGAAAAAGTGGAGAAGGTTCTGC
TCTCCGTGGTGAGCAATATTTGGTCCCTAAAGCAAATCCAGTTGCGCGAG
CTAGAGCGCGACTTGGCCAGCGGCGAAATTGAGGAGCCTTTGGGCTCGTC
GGTGGTTGGTCGTGGCAGCGGTGTTGGCACTATCAAGCGGCTTTCGAATC
GCCTTATGACCATGATGGTGCGCCGTAGCATGACTCCAGTAGTGACACCC
AGTACAACGCCCGCACCATCGGAGCCAGATCGTCGCCTTTCCGAGCCCCC
AAAGACCAAGAAGCCCGTCAACCGGCCCATAGAAGAAGTGATTGAAGACA
TCTTGCAGCTGGACAGCAAGTACCTCTTCCGTGGGCTTAGCCGCGAGCCC
ATATGCAAATATTGTTACCAGGCGGGATCCGATCTAGTGCGCTGCTCGCG
CACCTGCTCGAGCTGGCTGCATGCCGACTGCCTGGAACGAAAGGTGACAG
GAGCTCCGATGCCCAAAATAGGCAGTCGAAAGGCTCTGGTCATTCCACCC
ACATCGAAATCTCCCAGTCCCGATGAGGATCATGTAACAGCCGACGCCAA
GGAGGTTGTTGCCGTTGGTACCTCACTGGTGTGTCATGAGTGCAATGTGG
GCGAACCGGAAGGCTGTGTCATTTGCCATCAAGTTGAATCGCCAGCTGTA
CCAAGCACTCCCCGGAAGGAGGATTCATCATCGCACACGCCAATCGAAGA
TAAGCTCCTGACATGCAGCCAGCCTATGTGTGGAAAGCGGTTTCACACGA
GTTGCTGCAAATATTGGCCGCAGGCGAGCAGCAGCAAACATTCGGCGCGT
TGTCCACGGCACGTGTGCCACACATGCGTCTCCGACGATCCCAGCGGCAA
GTTCCAGCAGCTGGGCAGCTCCAAACTGGCCAAGTGCGTTCGCTGCCCGG
CCACGTATCACCAGCTCTCAAAATGCATTCCAGCCGGCACCCAGATGCTC
AACACTACCAATATAATCTGTCCGCGTCACAACATCGCCAAGGCGGATGC
CCACGTCAATGTTCTGTGGTGCTACATCTGCGTCAAAGGCGGCGAATTGG
TATGCTGCGAAACGTGCCCCATTGCTGTGCACGCCCACTGCCGGAATATT
CCCATCAAGACCAATGAGAGCTACATCTGTGAGGAGTGCGAGAGCGGTCG
TCTACCGCTGTACGGCGAGATCGTGTGGGCGAAGTTCAACAACTTCCGCT
GGTGGCCGGCCATTATCCTGCCACCCACTGAGGTGCCCAGCAATATACTA
AAGAAGGCTCACGGCGAGAATGACTTTGTGGTGCGATTCTTTGGCACACA
CGATCATGGCTGGATTTCACGACGTCGCGTTTATCTCTACATCGAGGGGG
ATACGGGAGATGGACATAAGACCAAATCGCAGCTGTTTCGCAACTACACC
ACCGGCGTGGAAGAGGCGTCGCGCTTCCTTCCGATCATCAAAGCCCGCCG
GCAGGAACAGGACATGGAACGCCAAAGCGGTAATAAGCTCCATCCGCCTC
CATATGTGAAAATCAAGACCAATAAGGCGGTGCCACCGTTGCGATTCTCG
CAGAATCTAGAGGATTTGAGTACTTGTAACTGCCTGCCGGTGGACGAGCA
TCCCTGTGGCCCGGAAGCTGGCTGCCTTAACCGCATGCTGTTCAATGAAT
GCAATCCGGAGTACTGCAAGGCTGGCAGTCTTTGCGAGAATCGAATGTTT
GAGCAACGCAAGTCGCCACGTTTGGAGGTGGTCTACATGAACGAGCGAGG
ATTTGGCCTCGTCAACCGTGAGCCCATAGCCGTGGGTGACTTTGTCATCG
AGTACGTGGGCGAGGTGATCAACCATGCCGAGTTCCAGCGGCGCATGGAG
CAGAAGCAGCGTGATCGCGACGAGAACTACTACTTCTTGGGTGTGGAAAA
GGACTTTATAATCGATGCGGGACCGAAGGGCAACTTGGCTCGCTTCATGA
ACCATTCGTGCGAGCCCAACTGCGAGACTCAGAAGTGGACCGTCAATTGC
ATCCATCGTGTGGGCATATTTGCAATCAAAGACATTCCAGTGAACTCGGA
GCTCACCTTCAACTACTTGTGGGACGACTTAATGAACAACAGCAAGAAGG
CCTGCTTCTGCGGAGCAAAGCGGTGTTCCGGCGAGATAGGCGGCAAACTC
AAGGATGATGCAGTTAAGGCCCATGCCAAGTTGAAGCAGATGCGGCGGGC
AAAAGCATCCGCCGTTCGTATCCATGTGAAGCCTAAGAAGACTCCCAAGG
TGAAACACATAAGTGCGGACGATGAGCCAATGGATGCGAAGGACGAGTAA
AAGCTTTCTAGACCAT
BS29680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes-4-RA | 4284 | CG4976-PA | 1..4284 | 17..4300 | 21405 | 100 | Plus |
| Mes-4-RB | 4272 | CG4976-PB | 1..4272 | 17..4300 | 21190 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes-4-RA | 4589 | CG4976-RA | 105..4388 | 17..4300 | 21405 | 100 | Plus |
| Mes-4-RB | 4577 | CG4976-RB | 105..4376 | 17..4300 | 21190 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27933563..27935993 | 4042..1612 | 12140 | 100 | Minus |
| 3R | 32079331 | 3R | 27936062..27937337 | 1611..336 | 6380 | 100 | Minus |
| 3R | 32079331 | 3R | 27937430..27937749 | 336..17 | 1600 | 100 | Minus |
| 3R | 32079331 | 3R | 27933183..27933317 | 4300..4166 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 27933372..27933499 | 4169..4042 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:16:57 has no hits.
BS29680.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 15:00:49 Download gff for
BS29680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes-4-RA | 101..4382 | 17..4298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:20 Download gff for
BS29680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes-4-RA | 105..4386 | 17..4298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:12 Download gff for
BS29680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes-4-RA | 105..4386 | 17..4298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:12 Download gff for
BS29680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27937431..27937749 | 17..335 | 100 | | Minus |
| 3R | 27933185..27933314 | 4169..4298 | 100 | <- | Minus |
| 3R | 27933373..27933498 | 4043..4168 | 100 | <- | Minus |
| 3R | 27933563..27935993 | 1612..4042 | 99 | <- | Minus |
| 3R | 27936062..27937337 | 336..1611 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:20 Download gff for
BS29680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23758907..23759036 | 4169..4298 | 100 | <- | Minus |
| arm_3R | 23759095..23759220 | 4043..4168 | 100 | <- | Minus |
| arm_3R | 23759285..23761715 | 1612..4042 | 99 | <- | Minus |
| arm_3R | 23761784..23763059 | 336..1611 | 100 | <- | Minus |
| arm_3R | 23763153..23763471 | 17..335 | 100 | | Minus |
BS29680.pep Sequence
Translation from 16 to 4299
> BS29680.pep
MKLSTDAHSEIEGDAAHGNVLCNSASDSLTATDEVAAGNDESVATEGDDV
EIPRDTNNSTPVRLLDKPGQNPVQNGAQPAAEESELESQRQTPVQKQQQQ
RVSMVNRKRDLINLQSALSPKYIGYANANSPTPLSDSDDTIRTTRRRVNQ
AAALNNSSAGETLAHDNASPRTPGGGGGGGGDDSANQLLSKTYMSPIEKL
LIKNGASSPNSTGFEAGSEDLGIRPIVRKHVKRKMKRVPKAKVTLELDEK
NQQEVDEKSVKTEPIDEEVDRTDEAPTQEAQTTAISIKSETEAEHKAAVD
VHIKQEDTIRLDIVNNPVESTSIVITEEPKDLEKSTEELAFALPLASSTE
VDLKSPPDLSSTALATSIKSPSSVSIDSAKGLSIVTDPGWPTYQVGDLFW
GKVFSYCFWPCMVCPDPLGQIVGNMPSHPQRSSLDNANVPIQVHVRFFAD
NGRRNWIKPENLLTFAGLKAFDDMREELRIKHGPKSAKYRQMVPKRTKVV
IWRQAIEEAQAMTQIPYSDRLEKFYQTYENVVTLNRQKRKRTKYMMQDTS
DVGSSLYDSTDNLHNKQGTQLLAVKRERSESPFSPAFSPVKSKNEKRAKR
RKLSNGTEADTGSNSMAVTPSQTETTVDSSAYENPEFRQLLSAVMEYVMM
NRSDEKVEKVLLSVVSNIWSLKQIQLRELERDLASGEIEEPLGSSVVGRG
SGVGTIKRLSNRLMTMMVRRSMTPVVTPSTTPAPSEPDRRLSEPPKTKKP
VNRPIEEVIEDILQLDSKYLFRGLSREPICKYCYQAGSDLVRCSRTCSSW
LHADCLERKVTGAPMPKIGSRKALVIPPTSKSPSPDEDHVTADAKEVVAV
GTSLVCHECNVGEPEGCVICHQVESPAVPSTPRKEDSSSHTPIEDKLLTC
SQPMCGKRFHTSCCKYWPQASSSKHSARCPRHVCHTCVSDDPSGKFQQLG
SSKLAKCVRCPATYHQLSKCIPAGTQMLNTTNIICPRHNIAKADAHVNVL
WCYICVKGGELVCCETCPIAVHAHCRNIPIKTNESYICEECESGRLPLYG
EIVWAKFNNFRWWPAIILPPTEVPSNILKKAHGENDFVVRFFGTHDHGWI
SRRRVYLYIEGDTGDGHKTKSQLFRNYTTGVEEASRFLPIIKARRQEQDM
ERQSGNKLHPPPYVKIKTNKAVPPLRFSQNLEDLSTCNCLPVDEHPCGPE
AGCLNRMLFNECNPEYCKAGSLCENRMFEQRKSPRLEVVYMNERGFGLVN
REPIAVGDFVIEYVGEVINHAEFQRRMEQKQRDRDENYYFLGVEKDFIID
AGPKGNLARFMNHSCEPNCETQKWTVNCIHRVGIFAIKDIPVNSELTFNY
LWDDLMNNSKKACFCGAKRCSGEIGGKLKDDAVKAHAKLKQMRRAKASAV
RIHVKPKKTPKVKHISADDEPMDAKDE*
BS29680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes-4-PA | 1427 | CG4976-PA | 1..1427 | 1..1427 | 7545 | 100 | Plus |
| Mes-4-PB | 1423 | CG4976-PB | 1..1423 | 1..1427 | 7510 | 99.7 | Plus |
| Set2-PB | 2313 | CG1716-PB | 1312..1508 | 1187..1381 | 409 | 41.8 | Plus |
| Set2-PA | 2362 | CG1716-PA | 1361..1557 | 1187..1381 | 409 | 41.8 | Plus |
| ash1-PC | 2226 | CG8887-PC | 1320..1532 | 1163..1377 | 387 | 38 | Plus |
